View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21361_low_5 (Length: 450)

Name: NF21361_low_5
Description: NF21361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21361_low_5
NF21361_low_5
[»] chr1 (5 HSPs)
chr1 (124-255)||(35583626-35583757)
chr1 (332-435)||(35583265-35583368)
chr1 (19-120)||(35583809-35583910)
chr1 (371-419)||(1815306-1815354)
chr1 (371-418)||(43492457-43492504)
[»] chr6 (1 HSPs)
chr6 (371-435)||(16766757-16766821)
[»] chr5 (1 HSPs)
chr5 (371-418)||(7677765-7677812)
[»] chr3 (1 HSPs)
chr3 (371-418)||(40993298-40993345)
[»] chr2 (1 HSPs)
chr2 (371-418)||(2438682-2438729)
[»] chr7 (2 HSPs)
chr7 (371-404)||(7197274-7197307)
chr7 (374-418)||(8234198-8234242)
[»] scaffold0053 (1 HSPs)
scaffold0053 (371-419)||(8847-8895)
[»] chr4 (2 HSPs)
chr4 (371-435)||(30982813-30982877)
chr4 (371-419)||(34306766-34306814)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 124 - 255
Target Start/End: Complemental strand, 35583757 - 35583626
Alignment:
Q  124 acaaaaactgagcagttgcgttccatttacaaaaacgaaatgaagcggctgccgctttagcagaaacaggctgaagtcacaccccaactcaacgcagttg 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35583757 acaaaaactgagcagttgcgttccatttacaaaaatgaaatgaagcggctgccgctttagcagaaacaggctgaagtcgcaccccaactcaacgcagttg 35583658  T
Q  224 cccaccaccgccacaaacaaactccgtccagg 255  Q
    |||||| |||||||||||||||||||||||||    
T  35583657 cccacctccgccacaaacaaactccgtccagg 35583626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 332 - 435
Target Start/End: Complemental strand, 35583368 - 35583265
Alignment:
Q  332 caccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatctatagaatgtctg 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  35583368 caccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacatgcccgacactgtgtcacgcctaatctatagaatgtctg 35583269  T
Q  432 tgct 435  Q
    ||||    
T  35583268 tgct 35583265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 35583910 - 35583809
Alignment:
Q  19 ggattaattatttgcacttgaacatttgactcattcatagtcgatgtgagactaatcactcacttacaaacatgtttaaattcaaaagaaacaaaaagcc 118  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  35583910 ggattaattatttgcacttgaacacttgactcattcataattgatgtgagactaatcagtcacttacaaacatgtttgaattcaagagaaacaaaaagcc 35583811  T
Q  119 ca 120  Q
    ||    
T  35583810 ca 35583809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 1815306 - 1815354
Alignment:
Q  371 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 419  Q
    |||||||||| ||||| ||||||||||||||||| | ||||||||||||    
T  1815306 tgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatct 1815354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 43492504 - 43492457
Alignment:
Q  371 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 418  Q
    |||||||||| |||||||||||||||||||||||   |||||||||||    
T  43492504 tgtcggtgtcagacacaacacatgtccgacaccggcacacgcctaatc 43492457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 16766757 - 16766821
Alignment:
Q  371 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatctatagaatgtctgtgct 435  Q
    |||||||||| |||||||||| |||||||||||| | |||||||||||   |||||||| |||||    
T  16766757 tgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgct 16766821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Original strand, 7677765 - 7677812
Alignment:
Q  371 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 418  Q
    ||||||||||||||||  |||||||||||||||| | |||||||||||    
T  7677765 tgtcggtgtctgacacgtcacatgtccgacaccgggacacgcctaatc 7677812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 40993345 - 40993298
Alignment:
Q  371 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 418  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  40993345 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 40993298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 2438729 - 2438682
Alignment:
Q  371 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 418  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  2438729 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 2438682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 404
Target Start/End: Complemental strand, 7197307 - 7197274
Alignment:
Q  371 tgtcggtgtctgacacaacacatgtccgacaccg 404  Q
    |||||||||| |||||||||||||||||||||||    
T  7197307 tgtcggtgtcggacacaacacatgtccgacaccg 7197274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 8234198 - 8234242
Alignment:
Q  374 cggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 418  Q
    ||||||| ||||| ||||||||||||||||| | |||||||||||    
T  8234198 cggtgtcggacacgacacatgtccgacaccgagacacgcctaatc 8234242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 8847 - 8895
Alignment:
Q  371 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 419  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  8847 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 8895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 30982877 - 30982813
Alignment:
Q  371 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatctatagaatgtctgtgct 435  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||| | ||| |||| |||||    
T  30982877 tgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgct 30982813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 34306814 - 34306766
Alignment:
Q  371 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 419  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  34306814 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 34306766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University