View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21361_low_8 (Length: 375)
Name: NF21361_low_8
Description: NF21361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21361_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 44694053 - 44694411
Alignment:
| Q |
1 |
acgtacttactaattttcaaaaataattattgatcgtccaagaaaaattctttagactgtttgcttcnnnnnnnnnnnnnnnnnnnn-caaacaaataac |
99 |
Q |
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| T |
44694053 |
acgtaattactaattttcaaaaataattattgatcgtccaagaaaaattctttagacgttttgctttttttttttcatgcttttttttcaaacaaataac |
44694152 |
T |
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| Q |
100 |
aagggtttgtttgtgtcctgatttttcttgaatgtaatatataaaaactaattagtaaattaatattattatcacatcagctatgtcttggcttcatatg |
199 |
Q |
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| T |
44694153 |
aagggtttgtttgtgtcctgatttttcttgaatgtaatatataaaaactaattagtaaattaatattattatcacatcagctatgtcttggcttcatatg |
44694252 |
T |
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| Q |
200 |
caaaattcctatgggatgctgaagaagatgaagataatgactgccaacataaaactgataagagccatacacattcacctgatctttttctaggagctaa |
299 |
Q |
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| T |
44694253 |
caaaattcctatgggatgctgaagaagatgaagataatgactgccaacataaaactgataagagccatacacattcacctgatctttttctaggagctaa |
44694352 |
T |
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| Q |
300 |
tggtcgttctcatgtcactgcagcctctaaaatctaacctctctgatccttctgagtga |
358 |
Q |
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| T |
44694353 |
tggtcgttctcatgtcactgcagcctctaaaatctaacctctctgcttcttctgagtga |
44694411 |
T |
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Back To:
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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 2305751 - 2305691
Alignment:
| Q |
181 |
tatgtcttggcttcatatgcaaaattcctatgggatgctgaagaagatgaagataatgact |
241 |
Q |
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| T |
2305751 |
tatgtcctagcttcatatgccaaattcctttgggatgctgaaaatgaagaagataaagact |
2305691 |
T |
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