View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21362_high_3 (Length: 429)
Name: NF21362_high_3
Description: NF21362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21362_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 11 - 411
Target Start/End: Complemental strand, 51935632 - 51935232
Alignment:
| Q |
11 |
cacagaatcaaagtccgaatagtatctgcaagagcttatcattctctatttatgcataatatgtgagtactaatggaatcacctatctttttcacacaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51935632 |
cacagaatcaaagtccgaatagtatctgcaagagcttatcattctctatttatgcataatatgtgagtactaatggaatcacctatctttttcacacaaa |
51935533 |
T |
|
| Q |
111 |
tattttaagccgtaccaattaattctttgcaaccttaaaaactagatttagcatgcacaattatacgacaannnnnnnacaggtgcatccgaccaacacc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51935532 |
tattttaagccgtaccaattaattctttgcaaccttaaaaactagatttagcatgcacaattatacgacaatttttttacaggtgcatccgaccaacacc |
51935433 |
T |
|
| Q |
211 |
tgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagc |
310 |
Q |
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| T |
51935432 |
tgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagc |
51935333 |
T |
|
| Q |
311 |
atagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctctttagtttaatgcactacctcatgc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51935332 |
atagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctctttagtttaatgcactacctcatgc |
51935233 |
T |
|
| Q |
411 |
c |
411 |
Q |
| |
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| |
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| T |
51935232 |
c |
51935232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 412
Target Start/End: Complemental strand, 28138193 - 28137971
Alignment:
| Q |
190 |
caggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcat |
289 |
Q |
| |
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||||||||| ||||| || ||| ||||||| ||| | ||||| || |||||||||||||| || ||||||||| ||| || |||||||||| ||| ||| |
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| T |
28138193 |
caggtgcattcgacctactcctaaagagcttgagaattttggcacaccagatttcactatttataatgcaggaaggtttccatgtaatcgttatacacat |
28138094 |
T |
|
| Q |
290 |
tacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctcttta |
389 |
Q |
| |
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|||||||| || ||||| || | || | |||||| |||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||| |
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| T |
28138093 |
tacatgacatcttcaaccagtgttgatcttaatctttcaaggaaggaaatggtcattcttggaacacaatatgctggtgaaatgaagaagggtcttttta |
28137994 |
T |
|
| Q |
390 |
gtttaatgcactacctcatgcct |
412 |
Q |
| |
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|| | ||||| || ||||||||| |
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| T |
28137993 |
gtgtcatgcattatctcatgcct |
28137971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 28138358 - 28138296
Alignment:
| Q |
12 |
acagaatcaaagtccgaatagtatctgcaagagcttatcattctctatttatgcataatatgt |
74 |
Q |
| |
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|||||||||||||| | || || ||||| |||||||||||||| || ||||||||||| |||| |
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| T |
28138358 |
acagaatcaaagtcaggattgtctctgccagagcttatcattcactctttatgcataacatgt |
28138296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 412
Target Start/End: Complemental strand, 12996152 - 12995929
Alignment:
| Q |
189 |
acaggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactca |
288 |
Q |
| |
|
||||||| |||||||| | ||||||||||| ||| | |||||||| || || ||||||||||||||||| ||| |||| || ||||| ||||| ||||| |
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| T |
12996152 |
acaggtgtatccgacccagtcctgaagagctggagaattttggtactccggacttcactatatacaatgccggaaagtttccatgtaaccgtttcactca |
12996053 |
T |
|
| Q |
289 |
ttacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctcttt |
388 |
Q |
| |
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|||||||| || || |||||||| || | |||||| | |||| ||||||||| ||||| ||||||||||| || || ||||||||||||||||| || |
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| T |
12996052 |
ctacatgacatcttccactagcattgatcttaatcttgctagaagggaaatggttatcctcggcacacaatacgccggggaaatgaagaaaggtcttttc |
12995953 |
T |
|
| Q |
389 |
agtttaatgcactacctcatgcct |
412 |
Q |
| |
|
||| | ||||| || ||||||||| |
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| T |
12995952 |
agtgtcatgcattatctcatgcct |
12995929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 412
Target Start/End: Complemental strand, 13070805 - 13070582
Alignment:
| Q |
189 |
acaggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactca |
288 |
Q |
| |
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||||||| |||||||| | ||||||||||| ||| | |||||||| || || ||||||||||||||||| ||| |||| || ||||| ||||| ||||| |
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| T |
13070805 |
acaggtgtatccgacccagtcctgaagagctggagaattttggtactccggacttcactatatacaatgccggaaagtttccatgtaaccgtttcactca |
13070706 |
T |
|
| Q |
289 |
ttacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctcttt |
388 |
Q |
| |
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|||||||| || || |||||||| || | |||||| | |||| ||||||||| ||||| ||||||||||| || || ||||||||||||||||| || |
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| T |
13070705 |
ctacatgacatcttccactagcattgatcttaatcttgctagaagggaaatggttatcctcggcacacaatacgccggggaaatgaagaaaggtcttttc |
13070606 |
T |
|
| Q |
389 |
agtttaatgcactacctcatgcct |
412 |
Q |
| |
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||| | ||||| || ||||||||| |
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| T |
13070605 |
agtgtcatgcattatctcatgcct |
13070582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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