View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21362_high_7 (Length: 253)
Name: NF21362_high_7
Description: NF21362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21362_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 5811759 - 5811540
Alignment:
| Q |
19 |
gataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5811759 |
gataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaagaagttcctgagtcgtgtcgactgtttgtacgtaatc |
5811660 |
T |
|
| Q |
119 |
tgccatacacgaccacgtactttcatagtgtttttcctgcttttccatttattatttttctactgaataaatatgtcttctgatagttaattttttatct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |
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| T |
5811659 |
tgccatacacgaccacgtactttcatagtgtttttcctgcttttccatttattatttttctactgaatgaatatgtcttccgacagttaattttttatct |
5811560 |
T |
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| Q |
219 |
tactaatatctttcaatgat |
238 |
Q |
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|||||||||||||||||||| |
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| T |
5811559 |
tactaatatctttcaatgat |
5811540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 37743328 - 37743205
Alignment:
| Q |
19 |
gataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatc |
118 |
Q |
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||||||||||||| || |||||| |||||||||| | |||||||||||||||||| ||||||| |||| ||||| |||||||||||||||| ||||||| |
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| T |
37743328 |
gataagtctcaagtgaatgcaactgaggaagaggggcaattatcaaatccagaagataagaaaggagtttctgagccgtgtcgactgtttgtccgtaatc |
37743229 |
T |
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| Q |
119 |
tgccatacacgaccacgtactttc |
142 |
Q |
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||||||| |||||||||| |||| |
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| T |
37743228 |
tgccatattcgaccacgtaatttc |
37743205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 37764511 - 37764393
Alignment:
| Q |
19 |
gataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatc |
118 |
Q |
| |
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||||||||||||| || | |||| |||||||||| | |||||||||||||||||| ||||||| |||| ||||| |||||||||||||||| ||||||| |
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| T |
37764511 |
gataagtctcaagtgaattcaactgaggaagaggggcaattatcaaatccagaagataagaaaggagtttctgagccgtgtcgactgtttgtccgtaatc |
37764412 |
T |
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| Q |
119 |
tgccatacacgaccacgta |
137 |
Q |
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||||||| |||||||||| |
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| T |
37764411 |
tgccatattcgaccacgta |
37764393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 38601805 - 38601928
Alignment:
| Q |
19 |
gataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatc |
118 |
Q |
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||||||||||||| || |||||| |||||||||| | ||||||||||||||||| ||||||| |||| ||||| |||||||||||||||| | ||||| |
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| T |
38601805 |
gataagtctcaagtgaatgcaactgaggaagaggggcaattatcaaatccagaatataagaaaggagtttctgagccgtgtcgactgtttgtccttaatc |
38601904 |
T |
|
| Q |
119 |
tgccatacacgaccacgtactttc |
142 |
Q |
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||||||| |||||||||| |||| |
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| T |
38601905 |
tgccatattcgaccacgtaatttc |
38601928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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