View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21362_low_1 (Length: 658)

Name: NF21362_low_1
Description: NF21362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21362_low_1
NF21362_low_1
[»] chr2 (14 HSPs)
chr2 (1-648)||(20926934-20927581)
chr2 (81-640)||(20952870-20953423)
chr2 (81-648)||(20934318-20934885)
chr2 (196-461)||(20923528-20923793)
chr2 (289-648)||(39273907-39274275)
chr2 (1-77)||(9829344-9829420)
chr2 (1-67)||(11573921-11573987)
chr2 (1-78)||(8277182-8277259)
chr2 (1-69)||(35000507-35000575)
chr2 (2-75)||(19987788-19987861)
chr2 (2-51)||(22787801-22787850)
chr2 (3-75)||(12892382-12892454)
chr2 (493-549)||(20923434-20923490)
chr2 (1-81)||(31133391-31133471)
[»] chr1 (30 HSPs)
chr1 (88-643)||(4322720-4323281)
chr1 (81-563)||(4334603-4335091)
chr1 (81-380)||(2006583-2006882)
chr1 (268-450)||(3361780-3361962)
chr1 (1-81)||(16315123-16315203)
chr1 (1-81)||(23941698-23941778)
chr1 (2-79)||(18426363-18426440)
chr1 (1-81)||(12063623-12063703)
chr1 (270-401)||(3378845-3378976)
chr1 (142-368)||(3218177-3218403)
chr1 (81-366)||(3349531-3349816)
chr1 (3-81)||(3368302-3368380)
chr1 (196-377)||(3340646-3340827)
chr1 (270-450)||(2012006-2012186)
chr1 (1-81)||(30704303-30704383)
chr1 (509-639)||(2948501-2948631)
chr1 (1-67)||(35577256-35577322)
chr1 (200-380)||(2019879-2020059)
chr1 (81-380)||(2948064-2948363)
chr1 (1-67)||(48025818-48025884)
chr1 (470-563)||(3345153-3345246)
chr1 (504-648)||(3361576-3361720)
chr1 (292-462)||(3372740-3372910)
chr1 (1-67)||(33402876-33402942)
chr1 (1-67)||(25817679-25817745)
chr1 (509-634)||(3340380-3340505)
chr1 (268-380)||(2010666-2010778)
chr1 (598-639)||(2006321-2006362)
chr1 (598-639)||(2010419-2010460)
chr1 (137-226)||(3341400-3341489)
[»] chr5 (12 HSPs)
chr5 (330-633)||(17969734-17970043)
chr5 (1-81)||(15235035-15235115)
chr5 (1-81)||(29195823-29195903)
chr5 (1-81)||(32910648-32910728)
chr5 (1-70)||(20887674-20887743)
chr5 (1-78)||(34017398-34017475)
chr5 (1-67)||(30491525-30491591)
chr5 (2-67)||(38739618-38739682)
chr5 (3-78)||(5504994-5505069)
chr5 (1-67)||(763115-763181)
chr5 (81-233)||(17970140-17970292)
chr5 (1-75)||(23276021-23276095)
[»] chr8 (9 HSPs)
chr8 (1-81)||(32075088-32075168)
chr8 (1-81)||(20532087-20532167)
chr8 (1-81)||(13868174-13868254)
chr8 (1-81)||(14189845-14189925)
chr8 (9-81)||(22661933-22662005)
chr8 (1-81)||(27188174-27188254)
chr8 (2-81)||(2807153-2807232)
chr8 (1-81)||(24626034-24626109)
chr8 (1-67)||(34276472-34276538)
[»] chr7 (11 HSPs)
chr7 (1-78)||(44222072-44222149)
chr7 (1-81)||(23941406-23941486)
chr7 (1-81)||(11356402-11356482)
chr7 (1-81)||(4278665-4278746)
chr7 (1-80)||(2369655-2369734)
chr7 (1-81)||(12868677-12868757)
chr7 (5-81)||(13070446-13070522)
chr7 (5-81)||(23562286-23562362)
chr7 (17-75)||(2834739-2834797)
chr7 (1-64)||(4452395-4452458)
chr7 (4-51)||(31730974-31731021)
[»] chr4 (19 HSPs)
chr4 (1-81)||(50008793-50008873)
chr4 (289-380)||(21237667-21237758)
chr4 (1-81)||(12656585-12656665)
chr4 (1-81)||(50336188-50336268)
chr4 (1-81)||(43209986-43210068)
chr4 (1-67)||(24972670-24972736)
chr4 (1-66)||(22182152-22182217)
chr4 (1-81)||(33990825-33990905)
chr4 (2-67)||(23283443-23283508)
chr4 (1-81)||(41418974-41419054)
chr4 (1-81)||(45246749-45246829)
chr4 (1-64)||(36499187-36499250)
chr4 (1-53)||(55524006-55524058)
chr4 (1-60)||(1938643-1938702)
chr4 (514-656)||(21237385-21237527)
chr4 (1-35)||(156888-156922)
chr4 (1-49)||(6599370-6599418)
chr4 (1-45)||(12586466-12586510)
chr4 (1-73)||(24904254-24904326)
[»] chr3 (12 HSPs)
chr3 (1-81)||(30933791-30933871)
chr3 (1-81)||(54335717-54335797)
chr3 (1-81)||(11916993-11917073)
chr3 (2-78)||(30528561-30528637)
chr3 (1-81)||(53767287-53767367)
chr3 (1-81)||(20518045-20518125)
chr3 (1-67)||(35995367-35995433)
chr3 (1-79)||(39649703-39649781)
chr3 (1-78)||(19867014-19867091)
chr3 (1-62)||(14443735-14443796)
chr3 (1-67)||(7666699-7666765)
chr3 (1-68)||(35063197-35063263)
[»] scaffold0599 (1 HSPs)
scaffold0599 (1-81)||(8744-8824)
[»] scaffold1050 (1 HSPs)
scaffold1050 (2-81)||(2125-2205)
[»] chr6 (5 HSPs)
chr6 (1-67)||(31522355-31522421)
chr6 (1-70)||(13543661-13543730)
chr6 (1-67)||(32275553-32275619)
chr6 (21-70)||(7452361-7452410)
chr6 (27-79)||(4321528-4321580)
[»] scaffold0037 (1 HSPs)
scaffold0037 (1-53)||(38133-38185)
[»] scaffold1063 (1 HSPs)
scaffold1063 (1-67)||(1706-1772)


Alignment Details
Target: chr2 (Bit Score: 604; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 1 - 648
Target Start/End: Complemental strand, 20927581 - 20926934
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcataattggaaagtattgtcaa 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20927581 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcatcaaatatcaggtaatgtatcatctaaactcataattggaaagtattttcaa 20927482  T
Q  101 agttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatcaacttctgtgaatttaaattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20927481 agttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatcaacttctgtgaatttaaattt 20927382  T
Q  201 ttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactcttaaagccttcaaac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20927381 ttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactcttaaagctttcaaac 20927282  T
Q  301 gtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagtatccctctatccaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20927281 gtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttggagtatccctctatccaaa 20927182  T
Q  401 cttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatcagacatacgactctcatcaatgagagcacactcagagaa 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  20927181 cttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatcagacacaagactctcatcaatgagagcacactcagagaa 20927082  T
Q  501 cttgaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacaggtcttcgaaagctgcagca 600  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  20927081 cttgaacatgttgattggcccataatgaagtaaaaggacatgatcagcaaatttcaaaaacttcctagcgataactaacaggtctttggaagctgcagca 20926982  T
Q  601 gagacacattgactatcaaacacaagatttggtagtgtgtaccctttg 648  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  20926981 gagacacattgactatcaaagacaagatttggtagtgtgtaccctttg 20926934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 81 - 640
Target Start/End: Complemental strand, 20953423 - 20952870
Alignment:
Q  81 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 180  Q
    |||||| ||||| ||||| ||||||||| |||||||||| ||||  |||| |||||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  20953423 taattgaaaagtgttgtcgaagttaataccctcatattcgccatcaatttccaaaaacttgagatttggtgcacgaatattaatttgggtgaaaccatca 20953324  T
Q  181 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttca 280  Q
    |||||| | ||||| |||||||||||||| ||||||||||| ||||| ||||| ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  20953323 acttctatcaatttcaatttttcaagcagagggcagccagagatcaagttttcaaaagcatcttgagccactgttactagattcagatcaagactcttca 20953224  T
Q  281 aactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 380  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20953223 acctcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 20953124  T
Q  381 gtagtatccctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatcagacatacgactctcatca 480  Q
    |||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  || |  ||||||| ||    
T  20953123 gtagtatcccgctatccaaaatttcagcacaagctctttaatagagcttctagttagatgaagaatccaccgatcaatatcactcagaaaactctcacca 20953024  T
Q  481 atgaga-gcacactcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaac 579  Q
    |||||| |  || ||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| |||||| ||||||||  | |||||||||    
T  20953023 atgagatgttca-tcatagaacttgaacatgttgattggcccagaatgaagtaaaagtacatgatcaacaattttcaataacttcctctcaataactaac 20952925  T
Q  580 aggtcttcgaaagctgcagcagagacacattgactatcaaacacaagatttggtagtgtgt 640  Q
     |||| || |  ||||||      ||||| |  |||||||||||||||||||| |||||||    
T  20952924 tggtcatcaatggctgca------acacaatttctatcaaacacaagatttggaagtgtgt 20952870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 81 - 648
Target Start/End: Complemental strand, 20934885 - 20934318
Alignment:
Q  81 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 180  Q
    |||||||||||| |||| |||||||||| |||||||||| |||| ||||| ||||||||||||||||||||||| ||||| || ||||| ||||||| ||    
T  20934885 taattggaaagtgttgttaaagttaataccctcatattcgccatggatttccaaaaacttgagatttggtgcacagatatcaatttgggcgaagccacca 20934786  T
Q  181 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttca 280  Q
    ||||| || ||||| |||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||| |||  |||||||||||||||| ||||    
T  20934785 acttcggtcaatttcaatttttcaagcagggggcagccagatatcaagttttcaaaagcatcttgagccactgctacatgattcagatcaagacttttca 20934686  T
Q  281 aactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 380  Q
    | ||| ||||||||| ||||  |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20934685 agctcctaaagcctttaaacaacgttggaggtttaagacaacagaaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 20934586  T
Q  381 gtagtatccctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatcagacatacgactctcatca 480  Q
    ||||  | ||||| | ||||| |||||||||||||||||||||||  | ||| ||||||  |||||||||||||||||||| |||| | |||||||||||    
T  20934585 gtagagttcctctgtacaaacatccagcacaagctctttaatagacttcctacttagatatagaatccactgatcaacatcggacacaagactctcatca 20934486  T
Q  481 atgagagcacactcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaaca 580  Q
    ||| ||||||||  |||||||||||| |||||||||| |||| ||||| ||||||| |||  || ||||| ||||||||| ||| |    |||||||||     
T  20934485 atgggagcacacatagagaacttgaatatgttgattggcccagaatgatgtaaaagtacactattaacaattttcaaaaatttcatctgaataactaacg 20934386  T
Q  581 ggtcttcgaaagctgcagcagagacacattgactatcaaacacaagatttggtagtgtgtaccctttg 648  Q
     ||||||| ||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||    
T  20934385 tgtcttcgtaagctgcagcagagagacattgtctatcaaacacaagatttgggagtgtgtaccatttg 20934318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 196 - 461
Target Start/End: Complemental strand, 20923793 - 20923528
Alignment:
Q  196 aatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactcttaaagcctt 295  Q
    |||||||||||||  ||| ||||||||||||| ||||| ||| ||| || ||||||||| ||| | | ||  | |||||| |||||  || | |||||||    
T  20923793 aatttttcaagcaaaggggagccagatatcaagttttcaaaagcatctttagccactgtaacttgttccaattgaagacttttcaagttcatgaagcctt 20923694  T
Q  296 caaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagtatccctctat 395  Q
    ||||| ||| ||||||||||||  || | |||   || |||||||||||||||||||||||||||||||||||||||||||| || |||  |  ||| |     
T  20923693 caaacatcgctggaggtttaagcgaagaacaaaacaaatttaaatgatgtaaactttgacaagagaataagcaccaaggtatgttatagcgttgctcgaa 20923594  T
Q  396 ccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatc 461  Q
    |||||  |||||| |||| | ||||||||| ||||| |||||||||||||||||| ||||||||||    
T  20923593 ccaaatgtccagctcaagatttttaatagaccttcttgttagatgaagaatccaccgatcaacatc 20923528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 289 - 648
Target Start/End: Complemental strand, 39274275 - 39273907
Alignment:
Q  289 aagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtag-tat 387  Q
    ||||||||||| || |||||||||||||| ||||| |||   || |||||| | || ||||||||||| ||||||||||||||||||||||| ||| | |    
T  39274275 aagccttcaaatgttgttggaggtttaagccaacaacaagccaactttaaacgttgcaaactttgacaggagaataagcaccaaggtatcttatagattt 39274176  T
Q  388 c--cctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatcagacatacgactctcatcaatga- 484  Q
    |  |||||  | |||| | ||||||||||||||||||||| ||||   |||||| || ||||||| ||||||  |||  |  | || || | |||| ||     
T  39274175 catcctctgccaaaacatgcagcacaagctctttaatagaccttccgattagataaacaatccaccgatcaaattcattcccaggaatcccttcaacgaa 39274076  T
Q  485 -----gagcacactcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaac 579  Q
         || || | |||||||||| |||| ||||||| |  ||| | ||||||||||| ||||||||||||| |||||||| |||  |  | ||| ||||     
T  39274075 atcctgaccagagtcagagaactcgaacttgttgataggtccagagtgaagtaaaagtacatgatcaacaattttcaaaagcttgttctcaatatctaaa 39273976  T
Q  580 aggtcttcgaaagctgcagcagagacacattgactatcaaacacaagatttggtagtgtgtaccctttg 648  Q
     |||||| | || ||  ||||||||||||  | ||||||||||||||||||||||||||||||| ||||    
T  39273975 gggtcttgggaacctctagcagagacacaacgtctatcaaacacaagatttggtagtgtgtaccatttg 39273907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9829420 - 9829344
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaac 77  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| | ||||||| ||||    
T  9829420 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcatgtattatatcatcaaaac 9829344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11573921 - 11573987
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||||||    
T  11573921 caaatcattgcaaatcgtcaggaaacaagtttctatgctcatcaagcatcaaagaacaggtaatgta 11573987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8277259 - 8277182
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 78  Q
    |||||||||||||||||||||||| |||||||||| |||||||||| |||||| | ||||||||||||| || |||||    
T  8277259 caaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagtatcaaagaacaggtaatgtatcgtcaaaact 8277182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35000507 - 35000575
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatc 69  Q
    ||||||||||||||||| |||||||||||| | ||  |||||||||||||||| | |||||||||||||    
T  35000507 caaatcattgcaaatcgccaggaagcaagtctatacactcatcaagcatcaaagaacaggtaatgtatc 35000575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 19987788 - 19987861
Alignment:
Q  2 aaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaa 75  Q
    ||||||| |||||| ||||||||||||||||||| |||||| || | | ||| || ||||||||||||||||||    
T  19987788 aaatcatcgcaaattgtcaggaagcaagtttctacgctcatgaaacgtaaaaaattaggtaatgtatcatctaa 19987861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 22787850 - 22787801
Alignment:
Q  2 aaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatca 51  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||||||    
T  22787850 aaatcattgcaaatcgtcatgaagtaagtttctacgctcatcaagcatca 22787801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 12892454 - 12892382
Alignment:
Q  3 aatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaa 75  Q
    |||||||| ||||||||| |||| ||||||||| ||| ||||| | | ||| |||||||||||||||||||||    
T  12892454 aatcattggaaatcgtcatgaagtaagtttctatgctaatcaaacgttaaaaatcaggtaatgtatcatctaa 12892382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 549
Target Start/End: Complemental strand, 20923490 - 20923434
Alignment:
Q  493 tcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaaca 549  Q
    ||||||| ||||||| ||||||||| |||| ||||||||||||| ||||| ||||||    
T  20923490 tcagagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaaca 20923434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 31133391 - 31133471
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||| |||||||||||| |  || |||||||||| | ||||||||||||||| | ||||||||||| | || ||||||||    
T  31133391 caaattattgcaaatcgttataaaacaagtttctatgttcatcaagcatcaaagaacaggtaatgtaccgtcaaaactcat 31133471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 88 - 643
Target Start/End: Original strand, 4322720 - 4323281
Alignment:
Q  88 aaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatcaacttctg 187  Q
    ||||| ||||||||| ||||| ||||  ||  ||| | |||||  ||||||||||||||||||||| ||||||||| |||||| || |||||||||||||    
T  4322720 aaagtgttgtcaaaggtaataccctcgaatagaccttcgatttcaaaaaacttgagatttggtgcatggatattaatttgggttaaaccatcaacttctg 4322819  T
Q  188 tgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactctt 287  Q
    | ||||| |  |||||||||| ||||||    |||||||  ||||| ||| ||| |||| ||||||| || ||||| ||||||||||| |||||  |  |    
T  4322820 tcaatttcatcttttcaagcaaggggcatttggatatcatgttttcaaaagcatcttgatccactgtaaccagatttagatcaagacttttcaagtttct 4322919  T
Q  288 aaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagtat 387  Q
     |||| |||||||  | | ||||||||||| ||||||||   ||||||||| |  |||||||||||||| |||||||| ||||||||||||| |||||||    
T  4322920 gaagctttcaaacaccatcggaggtttaagccaacaccatcttaattttaagttgtgtaaactttgacatgagaataaacaccaaggtatctggtagtat 4323019  T
Q  388 cc---ctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatcagacatacgact---ctcatcaa 481  Q
     |   |||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||| ||||||| |||  || | ||||   |||| ||     
T  4323020 tcttcctctatccaaacttccagcacaagctctttaatagaccttccaattagataaagaatccaccgatcaacgtcactcacaagactcccctcaccag 4323119  T
Q  482 tgagagcacactcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacag 581  Q
     |||| || | | | ||||||||||||||||||||| |||| ||||||||||||| ||||||||||| | |||| |||||||     | ||||||||  |    
T  4323120 ggagatcatagttacagaacttgaacatgttgattggcccagaatgaagtaaaagtacatgatcaaccattttcgaaaacttgggctcaataactaaagg 4323219  T
Q  582 gtcttcgaaagctgcagcagagacacattgactatcaaacacaagatttggtagtgtgtacc 643  Q
    ||||| | ||||| ||||||| |||||||| ||||||| |||||||||||| ||||| ||||    
T  4323220 gtcttgggaagcttcagcagacacacattgtctatcaagcacaagatttggaagtgtatacc 4323281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 81 - 563
Target Start/End: Original strand, 4334603 - 4335091
Alignment:
Q  81 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 180  Q
    |||||||||||| ||| ||||| ||| | ||||| ||||||||  |||||  ||||||||||||||||||||| | ||||||| ||| || || |||| |    
T  4334603 taattggaaagtgttgccaaaggtaacaacctcaaattcaccaacgatttcaaaaaacttgagatttggtgcatgaatattaatttgcgttaaaccataa 4334702  T
Q  181 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttca 280  Q
    | |||| | ||| | || |||||||||| |||||| | ||| || || ||||| ||| ||| |||| | |   | ||||||   ||||||||||| ||||    
T  4334703 aattctctcaatctcaacttttcaagcaaggggcacctagagataaagttttcaaaagcatcttgaacaatattcactagacatagatcaagacttttca 4334802  T
Q  281 aactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 380  Q
    |  |  |||||||||||||| ||||||||||||||||  |||||| || ||||||||||  ||||||||||||||| |||||||| |||||||||| |||    
T  4334803 agtttctaaagccttcaaacatcgttggaggtttaagcaaacacccatttaattttaaagaatgtaaactttgacatgagaataaacaccaaggtaactt 4334902  T
Q  381 gtagtatccctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatcagacatacgact---ctca 477  Q
    ||||||  | |||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||||  | || || | ||||   |||     
T  4334903 gtagtaatcatctatccaaacttccaacacaagctctttaatagaccttccaattagatgaagaatccaccgatcaatgttagtcacaagactatcctcg 4335002  T
Q  478 tcaatgagagca-ca--ctcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaactt 563  Q
     | |||||| || ||   | |||||||||||||||||||||||  ||| |||||| |||||| ||||||||||||| || |||||||||    
T  4335003 cccatgagatcatcaacgttagagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatttgcaaaaactt 4335091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 81 - 380
Target Start/End: Complemental strand, 2006882 - 2006583
Alignment:
Q  81 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 180  Q
    |||||||||||| ||||||||| ||||||||||| ||| ||||  ||| | ||||| ||| |||||||||||  | || || | ||||||||| ||||||    
T  2006882 taattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttaagatttggtgcgtgaatgtttatttgggtgaaaccatca 2006783  T
Q  181 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttca 280  Q
    | |||||| ||| | || ||||||||||| ||||| | |||||||||||| || ||| |||  |||| ||   | ||  ||| || ||||||||| || |    
T  2006782 agttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcatactgagacatgctaacatgatccaaatcaagacttttta 2006683  T
Q  281 aactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 380  Q
    |  |||| |||||||||| ||||| ||||||||||||  ||||  ||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||    
T  2006682 agttcttcaagccttcaatcgtcgatggaggtttaagcaaacaataatataatgttagatgatgtaaactttgacaagaaaataagcaccaaggtatctt 2006583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 268 - 450
Target Start/End: Complemental strand, 3361962 - 3361780
Alignment:
Q  268 tcaagactcttcaaactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagc 367  Q
    |||||||| |||||  |||| |||||||||||||| |||||||||||||| ||||| || | ||||| ||||||||||||||||||||||||||||||||    
T  3361962 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 3361863  T
Q  368 accaaggtatcttgtagtatccctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccac 450  Q
    ||||||| ||||| |||  | | |||| |||||  | |||||||| |||||||||||  ||||  ||||| |||| |||||||    
T  3361862 accaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaataggccttcgggttaggtgaataatccac 3361780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 16315203 - 16315123
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||| ||||||||    
T  16315203 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatataaggtattgtatcatcaaaactcat 16315123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 23941698 - 23941778
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||| ||||||||    
T  23941698 caaatcattgcaaatcgtcaggaagcaagtttctacgttcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 23941778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 18426440 - 18426363
Alignment:
Q  2 aaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 79  Q
    |||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||    
T  18426440 aaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaaacgtcaaaaatcagataatgtatcatctaaactc 18426363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 12063623 - 12063703
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||  |||||||||||| ||||||||| ||||||||    
T  12063623 caaatcattgcaaatcgtcaggaagcaagtttctacactcatcaagcactaaatatcaggtattgtatcatcaaaactcat 12063703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 270 - 401
Target Start/End: Complemental strand, 3378976 - 3378845
Alignment:
Q  270 aagactcttcaaactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcac 369  Q
    |||||| |||||| |||| |||||||||||  | |||||||||||||| | ||| |||| |||  |||||||| ||||||||||||||||||||||||||    
T  3378976 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacaacaatataagcttaaatgacgtaaactttgacaagagaataagcac 3378877  T
Q  370 caaggtatcttgtagtatccctctatccaaac 401  Q
    || | |||||| ||  || |||||||||||||    
T  3378876 catgttatcttataacattcctctatccaaac 3378845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 142 - 368
Target Start/End: Original strand, 3218177 - 3218403
Alignment:
Q  142 agatttggtgcacggatattaacttgggtgaagccatcaacttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcat 241  Q
    |||||||||||| ||||||||| |||||| || || ||||  | |   ||||| || | ||| |||||| ||||||| |||||||| ||||| ||| |||    
T  3218177 agatttggtgcatggatattaagttgggttaaaccttcaagatataacaatttcaaatcttctagcaggtggcagccggatatcaagttttcaaaagcat 3218276  T
Q  242 tttgagccactgttactagattcagatcaagactcttcaaactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatg 341  Q
     |||||||| ||| ||  |||  || |||||||| |||||  |||| ||||||| |||||| |||||||||| || |||||| || | |||||||||||     
T  3218277 cttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttgttggaggttgaatacaacaacagtctaattttaaatt 3218376  T
Q  342 atgtaaactttgacaagagaataagca 368  Q
     |||||||||||||| ||||| |||||    
T  3218377 ctgtaaactttgacatgagaacaagca 3218403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 81 - 366
Target Start/End: Complemental strand, 3349816 - 3349531
Alignment:
Q  81 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 180  Q
    |||||| ||||| |||||||||||||||  |||| ||||| | | |||||  |||||||||||| |||||||| |||||||||  ||||| || ||||||    
T  3349816 taattgaaaagtgttgtcaaagttaatactctcaaattcatcttcgatttcaaaaaacttgagacttggtgcatggatattaatatgggttaaaccatca 3349717  T
Q  181 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttca 280  Q
    | || ||| ||| | ||| | |||||||||||||||||||| ||||  || | |||| ||| ||||| || ||| ||  |||||| || |||||| ||||    
T  3349716 atttttgtcaatgtcaatctctcaagcagggggcagccagacatcatgttattgaaagcatcttgagtcattgtaacccgattcaaataaagacttttca 3349617  T
Q  281 aactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataag 366  Q
     | ||   |||||||||||  | |||||||||||||| || ||  |||  |  |||||||| ||||||| ||| || |||||||||    
T  3349616 gattccggaagccttcaaaaattgttggaggtttaagccagcaataattcagatttaaatgttgtaaaccttggcaggagaataag 3349531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 3368302 - 3368380
Alignment:
Q  3 aatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||||||||||| ||||||||||||||||||  || ||||||||||||| |||| ||||||||||||| ||||||||    
T  3368302 aatcattgcaaatcatcaggaagcaagtttctacacttatcaagcatcaaacatcaagtaatgtatcatcaaaactcat 3368380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 196 - 377
Target Start/End: Complemental strand, 3340827 - 3340646
Alignment:
Q  196 aatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactcttaaagcctt 295  Q
    |||| ||||||||||||||||||| ||||||  ||||| ||| ||| ||||| || ||| |||  |  || |  |||||| |||||| ||   |||||||    
T  3340827 aattcttcaagcagggggcagccacatatcatgttttcaaaagcatcttgagtcattgtaacttcaaacaaagaaagacttttcaaattccggaagcctt 3340728  T
Q  296 caaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtat 377  Q
    |||||||||||||||| ||||| |||||  |||  | || |||||| || ||||||||||||||||||||||| ||||||||    
T  3340727 caaacgtcgttggaggattaaggcaacaataattcagttctaaatgttgcaaactttgacaagagaataagcagcaaggtat 3340646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 270 - 450
Target Start/End: Complemental strand, 2012186 - 2012006
Alignment:
Q  270 aagactcttcaaactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcac 369  Q
    |||||| |||||  |||| |||||||||| | ||| ||||||||||||  ||||  ||  |||| ||| || |||||| ||||||||||| |||||||||    
T  2012186 aagacttttcaagttcttcaagccttcaatcatcgatggaggtttaagcaaacaagaaaataatgttagataatgtaagctttgacaagaaaataagcac 2012087  T
Q  370 caaggtatcttgtagtatccctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccac 450  Q
    ||||||||||| ||  ||    ||||| | | | |||||||||||||||| ||||| ||||| |||||||||| |||||||    
T  2012086 caaggtatcttatatgattgtcctatcgataatcccagcacaagctctttgatagaccttctggttagatgaaaaatccac 2012006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 30704383 - 30704303
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||||||||||||||||||||||||||||||||  ||||| || || |||||||||| || ||||||||| ||||||||    
T  30704383 caaatcattgcaaatcgtcaggaagcaagtttctacactcattaaacaccaaatatcagatattgtatcatcaaaactcat 30704303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 509 - 639
Target Start/End: Original strand, 2948501 - 2948631
Alignment:
Q  509 tgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacaggtcttcgaaagctgcagcagagacaca 608  Q
    ||||||||| |||| ||||||||||||| ||||||||||||| | |||||||||| ||  | |||||| |  |||||| | ||  ||||| ||| |||||    
T  2948501 tgttgattggcccagaatgaagtaaaagtacatgatcaacaattctcaaaaacttgctctcaataactgaagggtctttggaaattgcagtagatacaca 2948600  T
Q  609 ttgactatcaaacacaagatttggtagtgtg 639  Q
    | |||||||||||||||||| |||| |||||    
T  2948601 tcgactatcaaacacaagatctggttgtgtg 2948631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35577322 - 35577256
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||||||||||| | |||||||||||    
T  35577322 caaatcattgcaaatcgttaggaaacaagtttctacgctcatcaagcatcaaagaacaggtaatgta 35577256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 200 - 380
Target Start/End: Complemental strand, 2020059 - 2019879
Alignment:
Q  200 tttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactcttaaagccttcaaa 299  Q
    |||||||||| ||||| |||||||||||| | || ||||||| ||||| ||  || |   ||| ||  | |||||| |||||  |||||||||||||||     
T  2020059 tttcaagcagagggcaaccagatatcaaaatctcaaaatcatcttgagacatagtaatgtgatccaacttaagacttttcaagttcttaaagccttcaat 2019960  T
Q  300 cgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 380  Q
    ||||| ||||||||||||  ||||  ||  |||  ||| |||| |||| ||||||||||| ||||||||||||||||||||    
T  2019959 cgtcgatggaggtttaagcaaacaataagataaacttagatgaagtaagctttgacaagaaaataagcaccaaggtatctt 2019879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 380
Target Start/End: Original strand, 2948064 - 2948363
Alignment:
Q  81 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 180  Q
    |||||| ||||| |||||||||||||||  |||| ||||| | | || ||  ||||||||||||||||||||| | |||||||  || || || ||||||    
T  2948064 taattgaaaagtgttgtcaaagttaatactctcaaattcatcgtcgacttcaaaaaacttgagatttggtgcatgaatattaatatgagttaaaccatca 2948163  T
Q  181 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttca 280  Q
    | || ||  ||| | ||||| || |||| |||||||||| ||||||  || | |||| ||| ||||  || ||| ||  |||||| || |||| | ||||    
T  2948164 atttttgccaatgtcaatttctctagcacggggcagccatatatcatgttattgaaagcatcttgactcattgtaacccgattcaaataaagaattttca 2948263  T
Q  281 aactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 380  Q
     ||||   |||||||||||| | |||||||||||||| |||||  |||  |  | |||||||||||||| ||| || ||||||||| |  ||||||||||    
T  2948264 tactccggaagccttcaaactttgttggaggtttaagccaacaataattcagatctaaatgatgtaaaccttggcaggagaataaggatgaaggtatctt 2948363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 48025818 - 48025884
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    |||||||||||||||| ||| ||| |||||||||| ||||||||||||||||| | |||||||||||    
T  48025818 caaatcattgcaaatcatcaagaaacaagtttctatgctcatcaagcatcaaagaacaggtaatgta 48025884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 470 - 563
Target Start/End: Original strand, 3345153 - 3345246
Alignment:
Q  470 gactctcatcaatgagagcacactcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaactt 563  Q
    ||||||||  ||||||| |||| ||||||||||| |||||||| |||| |||| ||||||||||| | ||||||| ||||| ||||||| ||||    
T  3345153 gactctcactaatgagatcacattcagagaacttaaacatgtttattgtcccaaaatgaagtaaatgcacatgattaacaattttcaaacactt 3345246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 504 - 648
Target Start/End: Complemental strand, 3361720 - 3361576
Alignment:
Q  504 gaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacaggtcttcgaaagctgcagcagag 603  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||| | ||||||||||  ||  ||||||  |  |||||| | || ||| | |||||    
T  3361720 gaacttgttgattggcccataatgaagtaaaagtacatgatcaacaattctcaaaaacttgttattgataaccgaagggtcttgggaatctgtatcagag 3361621  T
Q  604 acacattgactatcaaacacaagatttggtagtgtgtaccctttg 648  Q
    |  || ||  ||||||| |||||||||||||| ||||||| ||||    
T  3361620 atgcaatgtttatcaaatacaagatttggtagcgtgtaccatttg 3361576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 462
Target Start/End: Complemental strand, 3372910 - 3372740
Alignment:
Q  292 ccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagtatccct 391  Q
    ||||||||||| |||||| |||||||   ||| |||  |||  |||||||| |||||||||||||||||||||| | | |||||||||| ||   |   |    
T  3372910 ccttcaaacgttgttggaagtttaagttgacaacaagataagcttaaatgacgtaaactttgacaagagaataaactcaaaggtatcttataacgtttgt 3372811  T
Q  392 ctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatca 462  Q
    ||| |||||  | ||||| ||||||||| ||||| ||||||| ||||||||||| |||  ||| |||||||    
T  3372810 ctaaccaaaagtgcagcagaagctcttttatagaccttctagatagatgaagaacccaacgatgaacatca 3372740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33402942 - 33402876
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    |||||||||||||||| || |||| |||||||||| |||||| |||||||||| | |||||||||||    
T  33402942 caaatcattgcaaatcttccggaaacaagtttctacgctcattaagcatcaaagaacaggtaatgta 33402876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 25817679 - 25817745
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    ||||||||||||||||||||  ||||||||||||  |||| |||||||||| | | |||||||||||    
T  25817679 caaatcattgcaaatcgtcataaagcaagtttctgcgctcgtcaagcatcatagaacaggtaatgta 25817745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 634
Target Start/End: Complemental strand, 3340505 - 3340380
Alignment:
Q  509 tgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacaggtcttcgaaagctgcagcagagacaca 608  Q
    ||||||||| |||| ||||||||||||| ||||||||||||| | | |||||||| ||  | |||||| |  ||| || | ||| | ||| ||| |||||    
T  3340505 tgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctctcaataactgaagggtgtttggaagtttcagtagatacaca 3340406  T
Q  609 ttgactatcaaacacaagatttggta 634  Q
    || || |||||||||||||| |||||    
T  3340405 ttcacgatcaaacacaagatctggta 3340380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 380
Target Start/End: Complemental strand, 2010778 - 2010666
Alignment:
Q  268 tcaagactcttcaaactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagc 367  Q
    |||||||| |||||  ||||||||||| |||  |||| ||||||||||||  |||   ||  |||  ||| |||| |||| ||||||||||| |||||||    
T  2010778 tcaagacttttcaagttcttaaagcctacaattgtcgatggaggtttaagcaaaccataagataaacttagatgaagtaagctttgacaagaaaataagc 2010679  T
Q  368 accaaggtatctt 380  Q
    |||||||||||||    
T  2010678 accaaggtatctt 2010666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 598 - 639
Target Start/End: Complemental strand, 2006362 - 2006321
Alignment:
Q  598 gcagagacacattgactatcaaacacaagatttggtagtgtg 639  Q
    ||||||||||||||  ||||||||||||||||||||| ||||    
T  2006362 gcagagacacattgtttatcaaacacaagatttggtattgtg 2006321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 598 - 639
Target Start/End: Complemental strand, 2010460 - 2010419
Alignment:
Q  598 gcagagacacattgactatcaaacacaagatttggtagtgtg 639  Q
    ||||||||||||||  ||||||||||||||||||||| ||||    
T  2010460 gcagagacacattgtttatcaaacacaagatttggtattgtg 2010419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 3341489 - 3341400
Alignment:
Q  137 acttgagatttggtgcacggatattaacttgggtgaagccatcaacttctgtgaatttaaatttttcaagcagggggcagccagatatca 226  Q
    ||||||||||||||||| | |||||||  || || || ||||||| |||| | ||| | |||| |||||| |||||||||| ||||||||    
T  3341489 acttgagatttggtgcatgaatattaatctgtgttaaaccatcaatttctttcaatgtcaattcttcaagtagggggcagctagatatca 3341400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 330 - 633
Target Start/End: Complemental strand, 17970043 - 17969734
Alignment:
Q  330 taattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagtatccctctatccaaacttccagcacaagctctttaatagagctt 429  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||| |||  | || ||  |||||  |||| |||||||||||||| ||| |||    
T  17970043 taattttaaatgatgtaaactttgataagaaaataagcaccaaggtatcttatagagttcccctgcccaaatgtccaacacaagctctttaacagatctt 17969944  T
Q  430 ctagttagatgaagaatccactgatcaacatcagacatacgactctcatcaatgagagcacactcagag-----aactt-gaacatgttgattgacccat 523  Q
    | ||||||||||||||||||| |||||||||||| ||||    || || ||| |||| |||| ||||||      ||||  ||| ||||||||| |||      
T  17969943 ccagttagatgaagaatccaccgatcaacatcagccatagagttcacaccaaggagatcacattcagagtcagtgacttcaaacttgttgattggccctg 17969844  T
Q  524 aatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacaggtcttcgaaagctgcagcagagacacattgactatcaaacac 623  Q
    ||||||||||||| ||||||||||  | | |||||||||| |   |||||||| | | ||||||| ||||| ||| ||| |||||||| |||||||||||    
T  17969843 aatgaagtaaaagtacatgatcaatgattctcaaaaacttgccctcgataactgaaaagtcttcggaagctacagtagatacacattgtctatcaaacac 17969744  T
Q  624 aagatttggt 633  Q
    ||||| ||||    
T  17969743 aagatctggt 17969734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15235115 - 15235035
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||||||||||||||| |||||||||  ||  ||||||||||||||||||||| ||||||||||||||||||||||    
T  15235115 caaatcattgcaaatcgtcagaaagcaagttcatacactcatcaagcatcaaatatcaagtaatgtatcatctaaactcat 15235035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 29195903 - 29195823
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| | ||||||| ||||||||    
T  29195903 caaatcattgcaaatcgtcagaaagcaagtttctacgctcatcaagcaccaaatatcaggtattatatcatcaaaactcat 29195823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 32910648 - 32910728
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||| ||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  32910648 caaaccattgcaaatcgtcatgaagcaagtttctacactcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 32910728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 20887743 - 20887674
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatca 70  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||||| ||||||||||||| |||||||    
T  20887743 caaatcattgcaaatcgtcaggaagaaagtttctacgcttatcaagcaccaaatatcaggtattgtatca 20887674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 34017475 - 34017398
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 78  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||| | || |||||||||| || |||||    
T  34017475 caaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaagaacatgtaatgtatcgtcaaaact 34017398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30491591 - 30491525
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||||| | |||||||||||    
T  30491591 caaatcattgcaaatcgtcaggagacaagtttctacgctcatcaagcatcaaagaacaggtaatgta 30491525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 38739618 - 38739682
Alignment:
Q  2 aaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||||| | |||||||||||    
T  38739618 aaatcattgcaaatcgtcaggaaacaag-ttctacgctcatcaagcatcaaagaacaggtaatgta 38739682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 5504994 - 5505069
Alignment:
Q  3 aatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 78  Q
    ||||||||||||||||||| || || ||||||| |||||||||| |||||| | ||||||||||| |||| |||||    
T  5504994 aatcattgcaaatcgtcagaaaacaggtttctacgctcatcaagaatcaaagaacaggtaatgtaccatcaaaact 5505069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 763181 - 763115
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    |||||||||||||||||| ||||| ||| |||||| ||||||||||||||||| |  ||||||||||    
T  763181 caaatcattgcaaatcgttaggaaacaaatttctacgctcatcaagcatcaaagaataggtaatgta 763115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 233
Target Start/End: Complemental strand, 17970292 - 17970140
Alignment:
Q  81 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 180  Q
    |||||| ||||| ||||||||| | ||  ||||| ||| |||||||||    ||||||||||||||||||||  | |||||||  || ||||| || | |    
T  17970292 taattgcaaagtgttgtcaaagctgatgccctcaaatttaccattgatgcgaaaaaacttgagatttggtgcgtgaatattaaactgagtgaaaccctta 17970193  T
Q  181 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttc 233  Q
    |||  ||| ||| | |||||||||||| | |||||||| |||||||| |||||    
T  17970192 actgatgtcaatattaatttttcaagctgagggcagccggatatcaagttttc 17970140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 23276021 - 23276095
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaa 75  Q
    |||||||||| ||| ||| ||||||||||||||||  ||||| || | ||||| || | ||||||||||||||||    
T  23276021 caaatcattggaaaacgttaggaagcaagtttctacactcataaaacgtcaaaaattatgtaatgtatcatctaa 23276095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 32075088 - 32075168
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32075088 caaatcattgtaaatcatcaggaagcaagtttctacgctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 32075168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 20532167 - 20532087
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  20532167 caaatcattgcaaattgtatggaagcaagtttctacgctcatcaagcatcaaataccaggtaatgtatcatctaaactcat 20532087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 13868254 - 13868174
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||||||||||||  ||||| |||||||||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  13868254 caaatcattgcaaatcgtggggaagtaagtttctacactcatcaagcatcaaatattaggtaatgtatcatctaaactcat 13868174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 14189845 - 14189925
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||||||||||||||| |||||| ||||| ||| ||||||||||||| ||| |||||||||| |||||||| |||||||    
T  14189845 caaatcattgcaaatcgttaggaagaaagttactacgctcatcaagcataaaaaatcaggtaatatatcatcttaactcat 14189925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 22661933 - 22662005
Alignment:
Q  9 tgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||| ||||||||| ||||||||    
T  22661933 tgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaagtattaggtattgtatcatcaaaactcat 22662005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 27188254 - 27188174
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||||| |||||||||||||||| |||| | || |||||| ||| ||| ||||||||||||||||||| |||||||    
T  27188254 caaatcattgctaatcgtcaggaagcaaatttccacgcccatcaatcataaaaaatcaggtaatgtatcatcttaactcat 27188174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 2807232 - 2807153
Alignment:
Q  2 aaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||||||||||| ||||||||||||  || |||| |||| ||||||| | |||||||||||||||| ||||||||    
T  2807232 aaatcattgcaaatcgttaggaagcaagttcttacgctcgtcaaacatcaaagaacaggtaatgtatcatcaaaactcat 2807153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 24626109 - 24626034
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||     |||||| |||||||||||| |||||||||    
T  24626109 caaatcattgcaaatcatcatgaagcaagtttctacgctcatcaagc-----atatcaagtaatgtatcatgtaaactcat 24626034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 34276472 - 34276538
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    |||||||||||||||||||| ||| |||||||||| || |||||| ||||||| | ||||| |||||    
T  34276472 caaatcattgcaaatcgtcatgaaacaagtttctacgcccatcaaccatcaaagaacaggtgatgta 34276538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 44222072 - 44222149
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 78  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  44222072 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcatcaaatatcaggtattgtatcatcaaaact 44222149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 23941406 - 23941486
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  23941406 caaatcattgcaaatcgtcatgaagcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 23941486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 11356402 - 11356482
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||||||||||||| |||||||||||||||||| | |||||||||| ||||||||||||| ||||||||| ||||||||    
T  11356402 caaatcattgcaaatcatcaggaagcaagtttctacgttcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 11356482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4278665 - 4278746
Alignment:
Q  1 caaatcattgcaaatcgtcaggaa-gcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||||||||| ||||||||||| | ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  4278665 caaatcattgcacatcgtcaggaaagtaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatctaaactcat 4278746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 2369734 - 2369655
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactca 80  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||||||||| | ||||||||||||| || |||||||    
T  2369734 caaatcattgcaaatcgtcatgaagcaagtttctacactcatcaagcatcaaagaacaggtaatgtatcctcaaaactca 2369655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 12868677 - 12868757
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||| |||||||| |||||| |||||||||  |||||||||||| ||| ||||| ||||||||||||| |||||||    
T  12868677 caaatcattacaaatcgtgaggaagtaagtttctacactcatcaagcataaaaaatcagataatgtatcatcttaactcat 12868757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 13070522 - 13070446
Alignment:
Q  5 tcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||| |||||| ||| ||||||||||||||  | ||||||||||||||||||||  ||||||||||||||||||||    
T  13070522 tcattccaaatcatcatgaagcaagtttctacacccatcaagcatcaaatatcagacaatgtatcatctaaactcat 13070446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 23562362 - 23562286
Alignment:
Q  5 tcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||| |||||||| || ||||||||||||| ||||||||||||| ||| |||| |||||||||||| | |||||||    
T  23562362 tcatttcaaatcgttagaaagcaagtttctacgctcatcaagcattaaaaatcaagtaatgtatcattttaactcat 23562286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 2834739 - 2834797
Alignment:
Q  17 gtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaa 75  Q
    |||| |||||||||||||| ||||||||| | ||||| |||||||||||||||||||||    
T  2834739 gtcatgaagcaagtttctacgctcatcaaacgtcaaaaatcaggtaatgtatcatctaa 2834797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4452458 - 4452395
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaat 64  Q
    ||||| |||||||||| ||||||||||||||||||   ||||||||||||||| | ||||||||    
T  4452458 caaataattgcaaatcatcaggaagcaagtttctacattcatcaagcatcaaagaacaggtaat 4452395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 31730974 - 31731021
Alignment:
Q  4 atcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatca 51  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||    
T  31730974 atcattgcaaatcgtcaggaagcaagtttctacactcatcaaacatca 31731021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 50008873 - 50008793
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  50008873 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 50008793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 289 - 380
Target Start/End: Complemental strand, 21237758 - 21237667
Alignment:
Q  289 aagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 380  Q
    |||||||||||||| |||||||||||||| ||||| |    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21237758 aagccttcaaacgttgttggaggtttaagccaacaacttgttaattctaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 21237667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 12656585 - 12656665
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| | ||||||| ||||||||    
T  12656585 caaatcattgcaaatcgtcagaaagcaagtttctacgctcatcaagcaccaaatatcaggtattatatcatcaaaactcat 12656665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 50336268 - 50336188
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||| ||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  50336268 caaaccattgcaaatcgtcatgaagcaagtttctatgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 50336188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 43210068 - 43209986
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcagg--taatgtatcatctaaactcat 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  || ||||||||| ||||||||    
T  43210068 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcaggtatattgtatcatcaaaactcat 43209986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 24972670 - 24972736
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||    
T  24972670 caaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaataacaggtaatgta 24972736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 22182217 - 22182152
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgt 66  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||    
T  22182217 caaatcattgcaaatcgttaagaagcaagtttctacgctcatcaagcatcaaatatcaggtaatgt 22182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 33990825 - 33990905
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||| ||| ||||||||| ||||||||    
T  33990825 caaatcattgcaaatcgtcatgaatcaagtttctacgctcatcaagcaccaaatatcaagtattgtatcatcaaaactcat 33990905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 23283443 - 23283508
Alignment:
Q  2 aaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||||||    
T  23283443 aaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaagaacaggtaatgta 23283508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 41418974 - 41419054
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||| |||||||| |||| ||||||||||| |||||||||||| ||||||||||||| ||||||||  ||||||||    
T  41418974 caaatcattacaaatcgttaggacgcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcataaaaactcat 41419054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 45246829 - 45246749
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||||||||||||||||| ||| |||||||| | ||||||||||||||||| | ||||||||||| | || ||||||||    
T  45246829 caaatcattgcaaatcgtcaagaaacaagtttccacgctcatcaagcatcaaagaacaggtaatgtaccgtcaaaactcat 45246749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36499187 - 36499250
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaat 64  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||||||||||| | ||||||||    
T  36499187 caaatcattgcaaatcgtcaggaaacaaatttctacgctcatcaagcatcaaagaacaggtaat 36499250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 55524006 - 55524058
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaa 53  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  55524006 caaatcattgtaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaa 55524058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1938643 - 1938702
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcagg 60  Q
    ||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||| ||||    
T  1938643 caaatcattgcaaatcgtcagaaagaaagtttctatgctcatcaagcaccaaataccagg 1938702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 656
Target Start/End: Complemental strand, 21237527 - 21237385
Alignment:
Q  514 attgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacaggtcttcgaaagctgcagcagagacacattgac 613  Q
    ||||||||| ||||||||| ||| ||||||||||||| | ||||||||||  ||  |||| || |  ||||||  |||| |||| |||||||||| ||      
T  21237527 attgacccagaatgaagtagaagtacatgatcaacaattctcaaaaacttgttactgatacctgaagggtcttgaaaagttgcatcagagacacaatgtt 21237428  T
Q  614 tatcaaacacaagatttggtagtgtgtaccctttgcttctcca 656  Q
    |||| |||||||||||||| |  ||||||| |||| |||||||    
T  21237427 tatcgaacacaagatttggcatagtgtaccatttgtttctcca 21237385  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 156922 - 156888
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttcta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  156922 caaatcattgcaaatcgtcaggaagcaagtttcta 156888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6599418 - 6599370
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcat 49  Q
    ||||||||||||| ||||||||||||| ||||||| ||| |||||||||    
T  6599418 caaatcattgcaagtcgtcaggaagcaggtttctatgcttatcaagcat 6599370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12586466 - 12586510
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaa 45  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||    
T  12586466 caaatcattgcaaatcgtcaggaaataagtttctacgctcatcaa 12586510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24904326 - 24904254
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatct 73  Q
    |||||||||  ||| | ||| |||||||||||||| ||||||||| | ||||| |||| ||||||| ||||||    
T  24904326 caaatcattaaaaaacatcatgaagcaagtttctacgctcatcaaacgtcaaaaatcaagtaatgtgtcatct 24904254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 30933871 - 30933791
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  30933871 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 30933791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 54335717 - 54335797
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||| ||||||||    
T  54335717 caaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaagcaccaaatatcaggtattatatcatcaaaactcat 54335797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 11916993 - 11917073
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||| ||||||||    
T  11916993 caaatctttgcaaatcgtcaggaagcaagtttctacgctcatcaagcacaaaatatcaggtattgtatcatcaaaactcat 11917073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 30528561 - 30528637
Alignment:
Q  2 aaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 78  Q
    ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||| ||||| |||||||||||||    
T  30528561 aaatcattgcaaatcgtcaggaagcaagtttctatactcatcaaacatcaaatatcatgtaatctatcatctaaact 30528637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 53767287 - 53767367
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||| ||||||||| ||||||||    
T  53767287 caaatcattgcaaatcgtcatgaagcaagtttctacgctcatcaagcaccaaatatcatgtattgtatcatcaaaactcat 53767367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 20518125 - 20518045
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||| ||||| ||||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  20518125 caaagcattgtaaatcgtcatgaagcaagtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 20518045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 35995367 - 35995433
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||||||    
T  35995367 caaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaagaacaggtaatgta 35995433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 39649781 - 39649703
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 79  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||||||||||| |  |||||||||| |||| ||||||    
T  39649781 caaatcattgcaaatcgtcaggaaacaaatttctacgctcatcaagcatcaaagaataggtaatgtaccatcaaaactc 39649703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 19867014 - 19867091
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 78  Q
    |||||||||| |||| |||||||| |||||||||| ||||||||||||||||| | ||||||||||||| || |||||    
T  19867014 caaatcattgtaaattgtcaggaaacaagtttctacgctcatcaagcatcaaagaacaggtaatgtatcgtcaaaact 19867091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14443796 - 14443735
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggta 62  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||| |||  ||||||||    
T  14443796 caaatcattgcaaatcgtcaggaagtaagtttctacgctcatcaagcaccaatgatcaggta 14443735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 7666765 - 7666699
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    |||||||||||||||| |||||||  ||||||||| ||||||||||||||||| | || ||||||||    
T  7666765 caaatcattgcaaatcatcaggaaataagtttctacgctcatcaagcatcaaagaacatgtaatgta 7666699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 35063197 - 35063263
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtat 68  Q
    ||||||||||||||||||||| || |||||||||| |||||||||| |||||| |  |||||||||||    
T  35063197 caaatcattgcaaatcgtcagaaa-caagtttctacgctcatcaagtatcaaagaataggtaatgtat 35063263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 8744 - 8824
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||| ||||||||    
T  8744 caaatctttgcaaatcgtcaggaagcaagtttctacgctcatcaagcacaaaatatcaggtattgtatcatcaaaactcat 8824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 2125 - 2205
Alignment:
Q  2 aaatcattgcaaatcgtcaggaagcaagtttctaggct-catcaagcatcaaatatcaggtaatgtatcatctaaactcat 81  Q
    |||||||||||||||||||||||||||||||||| ||| |||||| || ||||||||||||| ||||||||| ||||||||    
T  2125 aaatcattgcaaatcgtcaggaagcaagtttctacgctccatcaaccaccaaatatcaggtattgtatcatcaaaactcat 2205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31522421 - 31522355
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||||||    
T  31522421 caaatcattgcaaatcgtcaggaaacaagtttctatgctcatcaagcatcaaagaacaggtaatgta 31522355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13543730 - 13543661
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatca 70  Q
    |||||||||||||||||  |||||||||| ||||| |||||||||||||||||||| ||||||| |||||    
T  13543730 caaatcattgcaaatcggtaggaagcaagcttctacgctcatcaagcatcaaatattaggtaatctatca 13543661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 32275619 - 32275553
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    |||||| ||||||||||||||||| ||| |||||| ||||||||||||||||| | || ||||||||    
T  32275619 caaatctttgcaaatcgtcaggaaacaaatttctacgctcatcaagcatcaaagaacatgtaatgta 32275553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 7452410 - 7452361
Alignment:
Q  21 ggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgtatca 70  Q
    |||||| | ||||||  |||||||| ||||||||||||||||||||||||    
T  7452410 ggaagctaatttctacactcatcaaacatcaaatatcaggtaatgtatca 7452361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 4321580 - 4321528
Alignment:
Q  27 aagtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 79  Q
    ||||||||| ||||||||| ||||||| | ||||||||||| |||| ||||||    
T  4321580 aagtttctacgctcatcaatcatcaaagaacaggtaatgtaccatcaaaactc 4321528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38185 - 38133
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaa 53  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  38185 caaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaa 38133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1706 - 1772
Alignment:
Q  1 caaatcattgcaaatcgtcaggaagcaagtttctaggctcatcaagcatcaaatatcaggtaatgta 67  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||| || | || ||||||||    
T  1706 caaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcgaagaacatgtaatgta 1772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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