View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21362_low_10 (Length: 227)
Name: NF21362_low_10
Description: NF21362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21362_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 36716798 - 36716991
Alignment:
| Q |
18 |
attctctgtttgttgagtttaatttgaatggtatataaattaagtcatcgttgtcaatgttctgatgaattttctgtatgtttagttccatcttattaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36716798 |
attctctgtttgttgagtttaatttgaattgtatataaattaagtcatcgttgtcaaagttctgatgaattttctgtatgtttagttccatcttattaat |
36716897 |
T |
|
| Q |
118 |
ttgaatatgaactaaattagtgttgttaatattgtgtttaggcgattgagagaaggagggagagacagggaactgaggaaattgagcaaactgg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36716898 |
ttgaatatgaactaaattagtgttgttaatattgtgtttaggcgattgagagaaggagggagagacagggaactgaggaaattgagcaaactgg |
36716991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 1482090 - 1482203
Alignment:
| Q |
98 |
tttagttccatcttattaatttgaatatgaactaaattagtgttgttaatattgtgtttaggcgattgagagaaggagggagagacagggaactgaggaa |
197 |
Q |
| |
|
|||||||| |||| |||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1482090 |
tttagttctatctgattagtttgaatttgaattaatttagtgttgttaatattgtgtttaggcgattgagagaaggagggagagactgggaactgaggag |
1482189 |
T |
|
| Q |
198 |
attgagcaaactgg |
211 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1482190 |
attgagcaaactgg |
1482203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University