View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21362_low_2 (Length: 469)
Name: NF21362_low_2
Description: NF21362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21362_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 339 - 457
Target Start/End: Original strand, 26184659 - 26184777
Alignment:
| Q |
339 |
cacgtggggaagtggtggtccattctgtcttgcacgtgagttgcagtaaaagattgtgtcagtcacggttactatgatatccaatatgtcctacattatg |
438 |
Q |
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| T |
26184659 |
cacgtggggaagtggtggtccattctgtcttgcacgtgagttgcagtaaaagattgtgtcagtcacggttactatgatatccaatatgtcctacattatg |
26184758 |
T |
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| Q |
439 |
tggaatccaaacacaggtt |
457 |
Q |
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| T |
26184759 |
tggaatccaaacacaggtt |
26184777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 26183875 - 26184029
Alignment:
| Q |
21 |
agagacattggagtgtgttttcctcaaagtgtcgggttcgatcgattttcacaaataccaatttggatagactagtttaatttctttnnnnnnnnnttaa |
120 |
Q |
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| T |
26183875 |
agagacattggagtgtgttttcctcaaagtgttgggttcgat----ttttacaagtaccaatttgaatggactagtttaatttctttaaaaaaaa-ttaa |
26183969 |
T |
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| Q |
121 |
taaaaacaatttgaaaccgatctatatttacttctcgatcgaacacaaattatcgaaaaa |
180 |
Q |
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| T |
26183970 |
taaaaataatttgcaaccgatctatatttacttctcgatcgaacacaaattatcaaaaaa |
26184029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 26184427 - 26184516
Alignment:
| Q |
186 |
tttaataatagaagcaattaacacatgtacgtagtctccatgatttgtatctgataaagtgaagatcatgaatgtgatagtacccagaaa |
275 |
Q |
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| T |
26184427 |
tttaataatagaatcaattaacacatgcacgtactctccatgatttgtatctgataaagtgaagatcatgaatgtgatagtaccccgaaa |
26184516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 26184546 - 26184614
Alignment:
| Q |
273 |
aaagtgtacccaaaaacgaacctaaatagaatatctgttccattgtgtttgtgaagatcagttatgcac |
341 |
Q |
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| T |
26184546 |
aaagtgtacccaaaaacgaacctaaatagaatatctgttccattgtgtttgtgaagatcagttatgcac |
26184614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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