View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21362_low_4 (Length: 394)
Name: NF21362_low_4
Description: NF21362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21362_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 19581038 - 19581398
Alignment:
| Q |
13 |
aatatccctcaaattgcatttatgtgtttgaatctctaccttgaaaactaaaaatgttaaaaagaatccatctgtttttccttttatgtactgatcggaa |
112 |
Q |
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| T |
19581038 |
aatatccctcaaattgcattaatgtgtttgaatctctaccttgaaaactaaaaatgttaaaaagaatccatctatttttccttttatgtactgatcggaa |
19581137 |
T |
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| Q |
113 |
gtgaacatcaaccgatagtcgacattgctggagcacagtagagaacaacgataatttgcaatacagaacatctaattaagctctcgatgatggttcaaca |
212 |
Q |
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| T |
19581138 |
gtgaacatcaaccgatagtcgacattgctggagcacagtagagaacaacgataatttgcaatacagaacatctaattaagctctcgatgatggttcaaca |
19581237 |
T |
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| Q |
213 |
aaatttaagctccacaataacaaacatgcatccaaaatattaacaatatattattataaagccatgttattattgatatagcgcagtctgagccaaactt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19581238 |
aaatttaagctccacaataacaaacatgcatccaaaatattaacaata---tattataaagccatgttattattgatatagcgcagtctgagccaaactt |
19581334 |
T |
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| Q |
313 |
gtttatacatggtctagataatatttttgggtgagttcatacaagatatatagttaacagtttg |
376 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19581335 |
gtttatacatggtatagataatatttttgggtgagttcatacaagatatatagtcaacagtttg |
19581398 |
T |
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