View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21362_low_5 (Length: 349)
Name: NF21362_low_5
Description: NF21362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21362_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 28495369 - 28495699
Alignment:
| Q |
1 |
aacagaaccggaagaagcaggttttgatagagaaagatttgcagcagatgttgaatttgaagcaggtataccaaatattgatgatgaagaagaacaaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28495369 |
aacagaaccggaagaagcaggttttgatagagaaagatttgcagcagatgttgaatttgaagcaggtataccaaacattgatgatgaagaagaacaaatc |
28495468 |
T |
|
| Q |
101 |
aaggcatta---ttattattattagtagtagcatttcccatttgaactatctcagataaaccagaagaaccataaagggaattagaactttgtcccattt |
197 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28495469 |
aaggcattattattattattattagtagcagcatttcccatttgaactatctcagataaaccagaagaaccaaaaagggaattagaactttgtcccattt |
28495568 |
T |
|
| Q |
198 |
catgattcccttggtttaaccaaagtgataaacttggcctttgttgctccataatcatagtgttgttattgtttccaattccattgaaatctacatgatg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28495569 |
catgattcccttggtttaaccaaagtgataaacttggcctttgttgctccataatcatag---tgtttttgtttccaattccattgaaatctacatgatg |
28495665 |
T |
|
| Q |
298 |
aaatccatgtgagccaaattgtggatgtggaatt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
28495666 |
aaatccatgtgagccaaattgtggatgtggaatt |
28495699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University