View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21362_low_7 (Length: 294)
Name: NF21362_low_7
Description: NF21362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21362_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 48223807 - 48223632
Alignment:
| Q |
7 |
aatgcaacattctctctggttccaaatccattcaaacagcagacacagatacttcttgtgaaccaaatggaacctccttagcatacctgaaacttgaaag |
106 |
Q |
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| T |
48223807 |
aatgcaacattctctcgggttccaaatccgttcaaacagcagacacaagtacttcttgtaaaccaaatggaacctccttagcatacctgaaacttgaaag |
48223708 |
T |
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| Q |
107 |
acactatcaccgtaacaaatgtgaaacatttttcattaaaaatcataacaacaagcaaaagagaactccgtacaaa |
182 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||||| ||||||| |
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| T |
48223707 |
acattatcaccaaaacaaatgtgaaacatttttcattaaaaaacagaacaacaagcaaaggagaactatgtacaaa |
48223632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 23657017 - 23657132
Alignment:
| Q |
63 |
tgtgaaccaaatggaacctccttagcat-acctgaaacttgaaagacactatcaccgtaacaaatgtgaaa--catttttcattaaaaatcataacaaca |
159 |
Q |
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|||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| | |||||||||||||| | | ||||||||||| ||||||| || |
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| T |
23657017 |
tgtgaaccaaatagaatctccttagcatcacctgaaacttgaaagacactatcatcataacaaatgtgaaacccctcgttcattaaaaagcataacatca |
23657116 |
T |
|
| Q |
160 |
agcaaaagagaactcc |
175 |
Q |
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|| || ||| |||||| |
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| T |
23657117 |
aggaagagataactcc |
23657132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 5525996 - 5525869
Alignment:
| Q |
55 |
atacttcttgtgaaccaaatggaacctccttagcatacctgaaacttgaaagacactatcaccgtaacaaatgtgaaacatttttcattaaaaatcataa |
154 |
Q |
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| T |
5525996 |
atacttcttgtgaaccaaatggaacctccttagcatacctgaaacttgaaagactctatcaccataacaaatgtgaaacattgttcattaaaaagcataa |
5525897 |
T |
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| Q |
155 |
caacaagcaaaagagaactccgtacaaa |
182 |
Q |
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| T |
5525896 |
caacaagcaaaagagaactccgtacaaa |
5525869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 5525819 - 5525717
Alignment:
| Q |
180 |
aaaggttaacctagtcactaataataaagtcttgtaaccaaatttggaggtcgagttacagctcccatgaagagaaccacatttggatgcctcaatcttt |
279 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5525819 |
aaaggttaaccta-tcacaaataataaagtcttgtaaccaaatttggaggtcgaattacagctcccatgaagagaaccacatttggatgcctcaatcttt |
5525721 |
T |
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| Q |
280 |
tcat |
283 |
Q |
| |
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|||| |
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| T |
5525720 |
tcat |
5525717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 30005645 - 30005583
Alignment:
| Q |
221 |
atttggaggtcgagttacagctcccatgaagagaaccacatttggatgcctcaatcttttcat |
283 |
Q |
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| T |
30005645 |
atttggaggtcgaattacagctcccatgaagagaaccacatttggatgcctcaatcttttcat |
30005583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 45203488 - 45203426
Alignment:
| Q |
221 |
atttggaggtcgagttacagctcccatgaagagaaccacatttggatgcctcaatcttttcat |
283 |
Q |
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||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||| |||| |
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| T |
45203488 |
atttggaggtctagttatagctcccatgaagagaacaacatttggatgcctcagtcttctcat |
45203426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 43262165 - 43262207
Alignment:
| Q |
180 |
aaaggttaacctagtcactaataataaagtcttgtaaccaaat |
222 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
43262165 |
aaagattaacctagtctctaataataaagtcttgtaaccaaat |
43262207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 36229243 - 36229201
Alignment:
| Q |
180 |
aaaggttaacctagtcactaataataaagtcttgtaaccaaat |
222 |
Q |
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|||||||||||||||| |||||||||||||| |||||| |||| |
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| T |
36229243 |
aaaggttaacctagtctctaataataaagtcatgtaacgaaat |
36229201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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