View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21363_high_1 (Length: 483)

Name: NF21363_high_1
Description: NF21363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21363_high_1
NF21363_high_1
[»] chr1 (3 HSPs)
chr1 (48-460)||(52082489-52082901)
chr1 (15-460)||(52092653-52093103)
chr1 (142-260)||(19468478-19468596)
[»] chr8 (7 HSPs)
chr8 (141-237)||(27922509-27922605)
chr8 (147-237)||(17636403-17636493)
chr8 (147-237)||(18315275-18315365)
chr8 (141-237)||(32151302-32151398)
chr8 (141-235)||(17628018-17628112)
chr8 (195-261)||(28246273-28246339)
chr8 (195-235)||(21235613-21235653)
[»] chr5 (4 HSPs)
chr5 (145-260)||(41889533-41889648)
chr5 (141-237)||(32267476-32267572)
chr5 (142-232)||(41901542-41901632)
chr5 (141-214)||(20478107-20478180)
[»] chr3 (13 HSPs)
chr3 (141-260)||(51113760-51113879)
chr3 (141-237)||(51120895-51120991)
chr3 (86-233)||(33714861-33715008)
chr3 (86-224)||(33708989-33709127)
chr3 (141-214)||(13470757-13470830)
chr3 (414-455)||(33708804-33708845)
chr3 (420-455)||(33396785-33396820)
chr3 (420-455)||(37580607-37580642)
chr3 (155-222)||(37580837-37580904)
chr3 (420-454)||(33093715-33093749)
chr3 (152-222)||(37587571-37587641)
chr3 (36-108)||(514859-514931)
chr3 (420-452)||(36810812-36810844)
[»] chr4 (21 HSPs)
chr4 (141-235)||(1548428-1548522)
chr4 (141-237)||(8187093-8187189)
chr4 (50-218)||(1754429-1754589)
chr4 (144-237)||(7307864-7307957)
chr4 (141-237)||(546914-547010)
chr4 (141-237)||(1524488-1524584)
chr4 (147-250)||(532196-532299)
chr4 (141-235)||(553480-553574)
chr4 (141-238)||(3438567-3438663)
chr4 (152-216)||(640927-640991)
chr4 (141-237)||(1513409-1513505)
chr4 (48-164)||(6006235-6006351)
chr4 (141-237)||(8184032-8184128)
chr4 (141-260)||(55908707-55908826)
chr4 (141-235)||(1552771-1552865)
chr4 (281-327)||(1754624-1754670)
chr4 (171-237)||(12121459-12121525)
chr4 (141-210)||(558499-558568)
chr4 (141-209)||(1508033-1508101)
chr4 (48-104)||(1528338-1528394)
chr4 (141-237)||(1537769-1537865)
[»] chr6 (19 HSPs)
chr6 (141-237)||(6432162-6432258)
chr6 (139-238)||(6423216-6423315)
chr6 (146-260)||(6585216-6585330)
chr6 (139-214)||(6426510-6426585)
chr6 (142-233)||(14802338-14802429)
chr6 (141-214)||(6394865-6394938)
chr6 (144-237)||(6410010-6410103)
chr6 (144-214)||(10579761-10579831)
chr6 (141-209)||(6402861-6402929)
chr6 (141-225)||(6594620-6594704)
chr6 (141-225)||(14820694-14820778)
chr6 (147-214)||(6415973-6416040)
chr6 (141-260)||(11936254-11936373)
chr6 (141-260)||(11948234-11948353)
chr6 (141-214)||(6596953-6597026)
chr6 (145-214)||(7119162-7119231)
chr6 (145-214)||(7131640-7131709)
chr6 (154-214)||(6589348-6589408)
chr6 (195-235)||(12102321-12102361)
[»] chr2 (4 HSPs)
chr2 (155-237)||(32785774-32785856)
chr2 (147-205)||(44575529-44575587)
chr2 (141-233)||(45245091-45245183)
chr2 (141-250)||(1037653-1037762)
[»] scaffold0041 (1 HSPs)
scaffold0041 (141-212)||(39185-39256)
[»] chr7 (1 HSPs)
chr7 (141-214)||(15092176-15092249)


Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 48 - 460
Target Start/End: Original strand, 52082489 - 52082901
Alignment:
Q  48 atttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaa 147  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52082489 atttatctctctcagtcgtgtgcagttttctactacgtgcccgactcctttctctgtgatatgatcacaccgttccaagtccaattgtagtatcccacaa 52082588  T
Q  148 caactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082589 caactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagat 52082688  T
Q  248 tcagtgttgaacaagatctcatttccaagtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaatatctcag 347  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082689 tcagtgttgaacaagatctcatgtccaagtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaatatctcag 52082788  T
Q  348 gtcaagcacttgcaagtttggaaaaagagaagccaacattttgacgctttcattcttcaacaatggattgcgagccaaatggagagacttcacttgaggg 447  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082789 gtcaagcacttgcaagtttggaaaaagagaagccaacattttgatgctttcattcttcaacaatggattgcgagccaaatggagagacttcacttgaggg 52082888  T
Q  448 tatacaacaaagt 460  Q
    |||||||||||||    
T  52082889 tatacaacaaagt 52082901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 460
Target Start/End: Original strand, 52092653 - 52093103
Alignment:
Q  15 aacatcaacacacacctcacgacaacctcgtatatttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  52092653 aacatcaacacacacctcacgacaacctcgtatatttatctctctcaatcgtgtgcagtttt-tactacgtgcctcactcctttctctgtgatatgatca 52092751  T
Q  115 caccgttccaagtccaaatgtagtatcccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 214  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  52092752 caccgttccaagtccaattgtagtagcccacaaaaactctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctcca 52092851  T
Q  215 atttggaaacttgaaagttcattgaaagtagattcagtgttgaacaagatctcatttccaagtgaataattttacaatatcttaaaacttcaacgatacc 314  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||  | ||| ||| ||||||||||| |||||||||||||||| |||||    
T  52092852 atttggaaacttgaaagttcattgaaagtagattcaatgttgaccaagatctcaagttcaaatgagtaattttacaacatcttaaaacttcaacaatacc 52092951  T
Q  315 gtcagatatgcaatagcaatggcaata------tctcaggtcaagcacttgcaagtttggaaaaagagaagccaacattttgacgctttcattcttcaac 408  Q
     || |||||||||||||||||||||||      ||||||||||||| | |||| |||||| |||||||||| ||||||||||| ||||||||| ||||||    
T  52092952 ttcggatatgcaatagcaatggcaatatctcattctcaggtcaagcccctgcaggtttgggaaaagagaaggcaacattttgatgctttcatttttcaac 52093051  T
Q  409 aatggattgcgagccaaatggagagacttcacttgagggtatacaacaaagt 460  Q
      ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  52093052 cgtggattgcctgccaaatggagagacttcacttgagggtatacaacaaagt 52093103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 142 - 260
Target Start/End: Complemental strand, 19468596 - 19468478
Alignment:
Q  142 ccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaa 241  Q
    ||||||||  |||||||||||||||| | ||||||||||||||  ||||| | |||||| |||||||||||||  |||| ||||  |||||||| |  ||    
T  19468596 ccacaacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaa 19468497  T
Q  242 gtagattcagtgttgaaca 260  Q
    ||||||||| | |||||||    
T  19468496 gtagattcactcttgaaca 19468478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 27922509 - 27922605
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    ||||||||||||||||||||||| ||| | || |||||||||||  ||||| | |||||||||||||||||||||||||| ||||| ||||||||||    
T  27922509 cccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 17636493 - 17636403
Alignment:
Q  147 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    |||||||||||||||||||||||||| |||||| |||| |  ||| | |||||||||||||||||||||||||| ||||| ||||||||||    
T  17636493 acaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcatt 17636403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 18315365 - 18315275
Alignment:
Q  147 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    ||||||||||||||||||||| | || ||||||||||| |||||| | |||||||||||||||||||| ||||| ||||| ||||||||||    
T  18315365 acaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcatt 18315275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 32151302 - 32151398
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||   ||||   ||||||||| ||||||||||  ||||||||||  |||||||||    
T  32151302 cccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttcatt 32151398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 17628112 - 17628018
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 235  Q
    |||| ||||| ||||||||||||||   | || || |||||||| | | || | |||||||||||||||||||||||| |||| || ||||||||    
T  17628112 cccaaaacaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctccaatttagaaagtttaaagttca 17628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 28246339 - 28246273
Alignment:
Q  195 tgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaa 261  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| || | |||| |||||| ||||||||    
T  28246339 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaa 28246273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 21235613 - 21235653
Alignment:
Q  195 tgacaagttcaacacctccaatttggaaacttgaaagttca 235  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  21235613 tgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 145 - 260
Target Start/End: Complemental strand, 41889648 - 41889533
Alignment:
Q  145 caacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagta 244  Q
    ||||||||||||||||||  ||| | |||||||||||||| |||||| | ||| |||||||||||||||||||||| ||||| ||||||||||  |||||    
T  41889648 caacaactctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagta 41889549  T
Q  245 gattcagtgttgaaca 260  Q
    | |||| | |||||||    
T  41889548 gcttcactattgaaca 41889533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 32267476 - 32267572
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    ||||||||||||||||||||||| ||| | || ||||||||||| | |||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  32267476 cccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 41901632 - 41901542
Alignment:
Q  142 ccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagt 232  Q
    |||||||||||||||||||||| ||| | || ||||||||||| |||||| | |||||||||||||||||||| ||||| ||||| |||||    
T  41901632 ccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 20478180 - 20478107
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 214  Q
    |||||||||| || ||||||||||| | |||||||| |||||||  ||||| | ||||||||||||||||||||    
T  20478180 cccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctcca 20478107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 51113879 - 51113760
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaa 240  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||   |||| ||||||||||  |||||||||| ||||| | ||| ||||||||||  |    
T  51113879 cccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattcca 51113780  T
Q  241 agtagattcagtgttgaaca 260  Q
    ||||| |||||| |||||||    
T  51113779 agtagcttcagttttgaaca 51113760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 51120991 - 51120895
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    ||||| ||||||||||||||| ||||| | | |||||||||||| | |||| |  ||||||||||||||||||||||||  ||||| ||||||||||    
T  51120991 cccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 51120895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 33715008 - 33714861
Alignment:
Q  86 gcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaacaactctttgagatcacatacaatgtttcatcatcaat 185  Q
    |||||||||| ||||| |||| ||||| |||   ||||| ||||| |||||| | || |   ||||||||||| ||| |||||||||   ||||||||||    
T  33715008 gcctcactcccttctccgtgacatgatgacaatcttccaggtccagatgtagaagccgagggcaactctttgaaatcgcatacaatgcgccatcatcaat 33714909  T
Q  186 ttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 233  Q
    | |||  ||||||||||||| |||||||| ||||||||||| ||||||    
T  33714908 tcttgagtttgacaagttcagcacctccagtttggaaacttcaaagtt 33714861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 33709127 - 33708989
Alignment:
Q  86 gcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaacaactctttgagatcacatacaatgtttcatcatcaat 185  Q
    |||||||||| ||||| |||| ||||| ||| | ||||| ||||| |||||| | || |   ||||||||||||||  |||||||||   ||||||||||    
T  33709127 gcctcactcccttctccgtgacatgatgacatccttccaggtccagatgtagaagccgagggcaactctttgagattgcatacaatgcaccatcatcaat 33709028  T
Q  186 ttttgtctttgacaagttcaacacctccaatttggaaac 224  Q
    | |||  | ||||||||||| |||||||| |||||||||    
T  33709027 tcttgagtctgacaagttcagcacctccagtttggaaac 33708989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 13470830 - 13470757
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 214  Q
    |||||||||| |||||||||||| ||| | ||||| ||||| ||  ||||| ||||||||||||||||||||||    
T  13470830 cccacaacaattctttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctcca 13470757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 33708845 - 33708804
Alignment:
Q  414 attgcgagccaaatggagagacttcacttgagggtatacaac 455  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  33708845 attgtgagccaaatggagagacttcacttgatggtatacaac 33708804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 455
Target Start/End: Original strand, 33396785 - 33396820
Alignment:
Q  420 agccaaatggagagacttcacttgagggtatacaac 455  Q
    ||||||||||||||||||||||||| ||||||||||    
T  33396785 agccaaatggagagacttcacttgatggtatacaac 33396820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 455
Target Start/End: Complemental strand, 37580642 - 37580607
Alignment:
Q  420 agccaaatggagagacttcacttgagggtatacaac 455  Q
    ||||||||||||||||||||||||| ||||||||||    
T  37580642 agccaaatggagagacttcacttgatggtatacaac 37580607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 37580904 - 37580837
Alignment:
Q  155 ttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaa 222  Q
    |||||||||||||||||  || |||||||||| |||  |||||||||||||| ||||| | |||||||    
T  37580904 ttgagatcacatacaatactttatcatcaattcttgagtttgacaagttcaatacctcgagtttggaa 37580837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 454
Target Start/End: Complemental strand, 33093749 - 33093715
Alignment:
Q  420 agccaaatggagagacttcacttgagggtatacaa 454  Q
    ||||||||||||||||||||||||| |||||||||    
T  33093749 agccaaatggagagacttcacttgacggtatacaa 33093715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 37587641 - 37587571
Alignment:
Q  152 tctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaa 222  Q
    ||||||||||| ||||||||  || |||||||||| |||  | |||||||||||| ||||||| |||||||    
T  37587641 tctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaa 37587571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 514931 - 514859
Alignment:
Q  36 acaacctcgtatatttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgata 108  Q
    |||||||| || ||| |||||||||| ||||||||||||||  || || ||| |||||||  |||||||||||    
T  514931 acaacctcttaaattgatctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgata 514859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 452
Target Start/End: Complemental strand, 36810844 - 36810812
Alignment:
Q  420 agccaaatggagagacttcacttgagggtatac 452  Q
    ||||||||||||||||||||||||| |||||||    
T  36810844 agccaaatggagagacttcacttgatggtatac 36810812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 1548522 - 1548428
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 235  Q
    ||||||||||||||||||||||||||  | |||||||||||||||  |||| | |||||||||||||||||||| ||||| || || ||||||||    
T  1548522 cccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 1548428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 8187189 - 8187093
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    |||||||||||||||||| ||  |||| | ||||| |||||||| | |||| | |||||||||||||||||||| |||||||| || ||||||||||    
T  8187189 cccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcatt 8187093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 1754429 - 1754589
Alignment:
Q  50 ttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaaca 149  Q
    |||||||| |||  |||||||| ||||||||||| ||| ||||||||||||||||||||| || |||   ||| || ||||| || ||||  ||| | ||    
T  1754429 ttatctctttcaggcgtgtgcatttttctactacttgcttcactcctttctctgtgatattataacatttttctaaatccaattgcagtagtccagagca 1754528  T
Q  150 actctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaattt 218  Q
    ||||||||||||||  ||        |||| | |||||||||||| |||||||||||||||||||||||    
T  1754529 actctttgagatcatgta--------catccttaatttttgtcttcgacaagttcaacacctccaattt 1754589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 7307864 - 7307957
Alignment:
Q  144 acaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    |||||||||||||||||||| |   | || ||||||||||| || ||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  7307864 acaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 546914 - 547010
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    ||||||||||||||||||||||||||| | |||||||||||  |   ||||   ||||||||||| |||||||||||| | ||||| ||||||||||    
T  546914 cccacaacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcatt 547010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 1524584 - 1524488
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    ||||| |||||||| |||||||| ||| | ||||||||||||||   ||||   |||||| |||||||||||||| |||| ||||| ||||||||||    
T  1524584 cccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcatt 1524488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 532196 - 532299
Alignment:
Q  147 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtaga 246  Q
    |||| |||||||| ||||||| |   ||||||||||||| ||||| | |||||||||||||||||| |  ||||  |||| ||||||||||  |||||||    
T  532196 acaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtaga 532295  T
Q  247 ttca 250  Q
    ||||    
T  532296 ttca 532299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 553480 - 553574
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 235  Q
    |||| ||||||||||||| |||||||  | || ||||||||||| | ||||   |||||||||||||||||||| ||||  ||||| ||||||||    
T  553480 cccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttca 553574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 3438663 - 3438567
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattg 238  Q
    ||||||||||||||||||||| ||||  | | ||| |||||||| | |||| | ||||||| |||| ||||||||||| ||||| | |||||||||||    
T  3438663 cccacaacaactctttgagattacatggagtattt-atcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattg 3438567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 640927 - 640991
Alignment:
Q  152 tctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaat 216  Q
    |||||||| |||| || | ||||||||||||||  ||||| | ||||||||||||||||||||||    
T  640927 tctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaat 640991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 1513505 - 1513409
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    ||||| ||||| ||||||||| || || | ||||||||||||||  |||||   ||||||||||||||| || | ||||| ||||| ||||||||||    
T  1513505 cccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttcatt 1513409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 6006235 - 6006351
Alignment:
Q  48 atttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaa 147  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||| |||| ||||| || || ||| ||| |||| || |  || |||| |||| |     
T  6006235 atttatctctctcaattgtttgcagttttctacgacttgcatcactcccttctttgtgacatcataacaacgtcccaaatcaagttgcagtagcccaaag 6006334  T
Q  148 caactctttgagatcac 164  Q
    |||||| ||||||||||    
T  6006335 caactcattgagatcac 6006351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 8184128 - 8184032
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    |||||||||||||||||||||  |||| | || |  |||||||| | |||| | |||||||||||||||||| | ||| | ||||| ||||||||||    
T  8184128 cccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcatt 8184032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 55908826 - 55908707
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaa 240  Q
    |||||||||| |||||||||||| ||| | ||||||||||||||    ||| | ||||||||| |||||||| ||||  | ||||| |||||| |||  |    
T  55908826 cccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattcta 55908727  T
Q  241 agtagattcagtgttgaaca 260  Q
    ||||| |||| | |||||||    
T  55908726 agtagtttcactcttgaaca 55908707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 1552865 - 1552771
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 235  Q
    ||||| |||| ||||||| |||||||  | ||||||||||| ||| ||||| | |||||| |||||||| |||| ||||| || || ||||||||    
T  1552865 cccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttca 1552771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 327
Target Start/End: Original strand, 1754624 - 1754670
Alignment:
Q  281 taattttacaatatcttaaaacttcaacgataccgtcagatatgcaa 327  Q
    |||||||| || |||||||||||||||||||||| | ||||||||||    
T  1754624 taattttagaacatcttaaaacttcaacgatacctttagatatgcaa 1754670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 12121525 - 12121459
Alignment:
Q  171 tgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    ||||||||||||||  ||||| | ||||||||||||||| || | ||||| ||||| ||||||||||    
T  12121525 tgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 12121459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 558499 - 558568
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacc 210  Q
    ||||| ||||||||||||||||||||  | || |||||||||||| | |||   ||||||||||||||||    
T  558499 cccacgacaactctttgagatcacatggagtgcttcatcatcaatatatgttaatgacaagttcaacacc 558568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 1508101 - 1508033
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacac 209  Q
    ||||| ||||| ||||||||| ||| ||| ||||||||||||||  || || | |||||||||||||||    
T  1508101 cccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacac 1508033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 1528394 - 1528338
Alignment:
Q  48 atttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgt 104  Q
    |||||||||||||| | |||||||||||||||| || ||| | ||||| ||||||||    
T  1528394 atttatctctctcagttgtgtgcagttttctacaacttgcatgactccattctctgt 1528338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 1537865 - 1537769
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    ||||| ||||| ||||||||| ||| ||| |||||  |||| ||  ||||| | ||||||||||||||| || | ||||| ||||| ||||||||||    
T  1537865 cccacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 1537769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 6432162 - 6432258
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    |||||||||| ||||| |||||||||| | ||||||||||||||   |||| ||||||||||||||||||| ||  |||| ||||| ||||||||||    
T  6432162 cccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcatt 6432258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 6423216 - 6423315
Alignment:
Q  139 atcccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattg 238  Q
    |||||||||||||||||||||||| |||| | ||||| |||   || | |||| ||||||||||||||||||||||  |||| ||||| |||||||||||    
T  6423216 atcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattg 6423315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 6585330 - 6585216
Alignment:
Q  146 aacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtag 245  Q
    |||||||||||||||||||||| | ||||||||||||||  ||||| | |||||||||||| |||||||| | || ||||  |||||| |||  ||||||    
T  6585330 aacaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtag 6585231  T
Q  246 attcagtgttgaaca 260  Q
     |||| | |||||||    
T  6585230 cttcactcttgaaca 6585216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 6426510 - 6426585
Alignment:
Q  139 atcccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 214  Q
    |||| ||||||| ||||||||||| |||| || ||||||||||||||  |||| |||||||| |||||||||||||    
T  6426510 atccgacaacaattctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctcca 6426585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 14802338 - 14802429
Alignment:
Q  142 ccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 233  Q
    ||||||||| ||||||| |||||||| | ||||||||||||||  ||||| |||||||| |||||||| ||||  |||| ||||| ||||||    
T  14802338 ccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 6394865 - 6394938
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 214  Q
    |||||||||| |||||||||||||| | |  |||||||||||||   |||| ||||||||||||||||||||||    
T  6394865 cccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctcca 6394938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 6410010 - 6410103
Alignment:
Q  144 acaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    ||||||| |||||||||||||||| |  |||||||||||||   |||| |||||| |||||||||||| ||  |||| ||||| ||||||||||    
T  6410010 acaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcatt 6410103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 10579831 - 10579761
Alignment:
Q  144 acaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 214  Q
    ||||||| |||||||||||  ||| | ||||| |||||||| |||||| | ||||||||||||||||||||    
T  10579831 acaacaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctcca 10579761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 6402861 - 6402929
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacac 209  Q
    ||||| |||| |||||||||||||||| | ||||||||||||||  || || | |||||||||||||||    
T  6402861 cccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacac 6402929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 6594704 - 6594620
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaact 225  Q
    |||||||||| ||||||||||||||   | ||| ||||||||||  | ||| |||||||||| ||||||||||| ||||| ||||    
T  6594704 cccacaacaattctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaact 6594620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 14820694 - 14820778
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaact 225  Q
    |||||||||| |||| ||||||| ||| | |||||||| |||||  ||||| ||||| |||||||||||||| || |||| ||||    
T  14820694 cccacaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaact 14820778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 6415973 - 6416040
Alignment:
Q  147 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 214  Q
    |||| |||||||||||||||| |  |||| ||||| ||  ||||| ||||||||||||||||||||||    
T  6415973 acaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctcca 6416040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 11936373 - 11936254
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaa 240  Q
    ||||| ||||||||||||||||  ||| | || || ||| |||| | ||||   |||||||| ||||||||||| ||||| ||||| |||||||| || |    
T  11936373 cccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgta 11936274  T
Q  241 agtagattcagtgttgaaca 260  Q
     |||| |||||| |||||||    
T  11936273 cgtagcttcagtcttgaaca 11936254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 11948353 - 11948234
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaa 240  Q
    ||||| ||||||||||||||||  ||| | || || ||| |||| | ||||   |||||||| ||||||||||| ||||| ||||| |||||||| || |    
T  11948353 cccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgta 11948254  T
Q  241 agtagattcagtgttgaaca 260  Q
     |||| |||||| |||||||    
T  11948253 cgtagcttcagtcttgaaca 11948234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 6597026 - 6596953
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 214  Q
    |||| ||||| ||||||||||  | || | ||||||||||||||  |||||  |||||||||||||||||||||    
T  6597026 cccagaacaattctttgagatagcgtagagtgtttcatcatcaacatttgtacttgacaagttcaacacctcca 6596953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 7119162 - 7119231
Alignment:
Q  145 caacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 214  Q
    |||||| |||| ||||||||||  | ||||||||||||||  || || | ||||||||||||||||||||    
T  7119162 caacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 7119231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 7131640 - 7131709
Alignment:
Q  145 caacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 214  Q
    |||||| |||| ||||||||||  | ||||||||||||||  || || | ||||||||||||||||||||    
T  7131640 caacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 7131709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 6589408 - 6589348
Alignment:
Q  154 tttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 214  Q
    |||||||||| ||| | ||||| ||||| ||  ||||| ||||||||||||||||||||||    
T  6589408 tttgagatcagatatagtgttttatcattaacatttgtatttgacaagttcaacacctcca 6589348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 12102321 - 12102361
Alignment:
Q  195 tgacaagttcaacacctccaatttggaaacttgaaagttca 235  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  12102321 tgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 32785856 - 32785774
Alignment:
Q  155 ttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 237  Q
    ||||||||||||| | || ||||||||||||| |||| | |||||||||||||||||| | ||||| | ||| ||||||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcatt 32785774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 44575587 - 44575529
Alignment:
Q  147 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttca 205  Q
    ||||||||||||||||||||||||||| |||||||||| | |||| |||||||| ||||    
T  44575587 acaactctttgagatcacatacaatgtgtcatcatcaactcttgtttttgacaaattca 44575529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 45245183 - 45245091
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 233  Q
    ||||| ||||||||||||||||||||  | ||||||||||||||   |||||| |||||| ||||||||||| | ||| | ||||| ||||||    
T  45245183 cccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtt 45245091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 1037762 - 1037653
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaa 240  Q
    |||||||||| |||||||||||| ||| | ||||||||||||||    ||| | ||||||||| |||||||| ||||  | ||||| |||||| |||  |    
T  1037762 cccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattcta 1037663  T
Q  241 agtagattca 250  Q
    ||||| ||||    
T  1037662 agtagtttca 1037653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 39185 - 39256
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctc 212  Q
    ||||| ||||||||||||||||||||| | ||||||||||| ||  |||||   || |||||||||||||||    
T  39185 cccactacaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc 39256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 15092249 - 15092176
Alignment:
Q  141 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 214  Q
    |||||||||| ||||||||||| |||| | ||||| ||||| ||  ||||| | |||||| |||||||||||||    
T  15092249 cccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctcca 15092176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University