View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21363_high_3 (Length: 409)
Name: NF21363_high_3
Description: NF21363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21363_high_3 |
 | |
|
| [»] scaffold1360 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 9 - 397
Target Start/End: Original strand, 4009917 - 4010305
Alignment:
| Q |
9 |
acatcatcaagaacaataagaaccttcatacgaccaatccttctcacagtataattagacaacccatttggcgaacggattttcacatcttctgctaata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4009917 |
acatcatcaagaacaataagaaccttcatacgaccaatccttctcacagtataattagacaacccatttggcgaacggattttcacatcttctgctaata |
4010016 |
T |
|
| Q |
109 |
gtgtagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4010017 |
gtgtagaaaaaagtttttctttcaaaaatgttcttccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaatt |
4010116 |
T |
|
| Q |
209 |
ttagttaaaaatttctcctgcaatagttgtcttgccaatacctcccatgccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaa |
308 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4010117 |
ttggttaaaaatttctcctgcaatagttgtcttgccaatacttcccatgccccaaattccaatgacactgaccttttctgactctttttgtaacaatgaa |
4010216 |
T |
|
| Q |
309 |
ttcaaatgtgcaattgatttgtcaattccaacaagtccttttgagttaactgggtgcttactcaacctcttcaacactagattgatgat |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4010217 |
ttcaaatgtgcaattgatttgtcaattccaataagtccttttgagttaactgggtgcttactcaacctcttcaacaatagattgatgat |
4010305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 4025150 - 4025535
Alignment:
| Q |
12 |
tcatcaagaacaataagaaccttcatacgaccaatccttctcacagtataattagacaacccatttggcgaacggattttcacatcttctgctaatagtg |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||| || ||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
4025150 |
tcatcaagaacaataaggaccttcatacggccaatccttctctcaatataactagacaacccatttggtgaatcgattttcacatcttctgctaatagtc |
4025249 |
T |
|
| Q |
112 |
tagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaatttta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4025250 |
tagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattcttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttg |
4025349 |
T |
|
| Q |
212 |
gttaaaaatttctcctgcaatagttgtcttgccaatacctcccatgccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaattc |
311 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||| || | |
|
|
| T |
4025350 |
tttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattct |
4025449 |
T |
|
| Q |
312 |
aaatgtgcaattgatttgtcaattccaacaagtccttttgagttaactgggtgcttactcaacctcttcaacactagattgatgat |
397 |
Q |
| |
|
||||| || |||| |||| ||||||||| ||||||||||| ||||| |||||||| |||||||| |||| ||| ||||||||||| |
|
|
| T |
4025450 |
aaatgagccattggtttgccaattccaataagtccttttgtgttaatagggtgcttgctcaaccttttcatcacaagattgatgat |
4025535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 397
Target Start/End: Original strand, 4002220 - 4002608
Alignment:
| Q |
9 |
acatcatcaagaacaataagaaccttcatacgaccaatccttctcacagtataattagacaacccatttggcgaacggattttcacatcttctgctaata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | ||| | |||||||||||| ||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
4002220 |
acatcatcaagaacaataagaaccttcatacggccaatcatcctctgaatataattagacagcccatttggtgaattaattttcacatcttctgctaata |
4002319 |
T |
|
| Q |
109 |
gtgtagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaatt |
208 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
4002320 |
gtgtagaaaaaagcttttcttttaaaaatgttattccatgccttcctgattcttcacttaccttttccaaaaaacaaaaaccttcatattcagagcaact |
4002419 |
T |
|
| Q |
209 |
ttagttaaaaatttctcctgcaatagttgtcttgccaatacctcccatgccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaa |
308 |
Q |
| |
|
| |||||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || |||||||||| |
|
|
| T |
4002420 |
tcggttaaaaacttcttcagcaatagttgtcttgccaatacctcccataccccaaattccaatgacacggaccttttctaactgttgacgtaacaatgat |
4002519 |
T |
|
| Q |
309 |
ttcaaatgtgcaattgatttgtcaattccaacaagtccttttgagttaactgggtgcttactcaacctcttcaacactagattgatgat |
397 |
Q |
| |
|
| |||||||||| || |||| ||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4002520 |
tctaaatgtgcaactggtttgccaattccaataagtccttttgtattaatagggtgcttactcaacctcttcaacacaagattgatgat |
4002608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 383
Target Start/End: Original strand, 3986916 - 3987290
Alignment:
| Q |
9 |
acatcatcaagaacaataagaaccttcatacgaccaatccttctcacagtataattagacaacccatttggcgaacggattttcacatcttctgctaata |
108 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||| | |||| || ||| | | ||||||| |||||| | | |||||||||||||| || |||| |
|
|
| T |
3986916 |
acatcatcaagaatgataagaaccttcatgcgtccaattcgtctctcaatatcactggacaacctatttggtgtatcaattttcacatcttcggccaata |
3987015 |
T |
|
| Q |
109 |
gtgtagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaatt |
208 |
Q |
| |
|
| ||| |||||| ||||||| ||| || |||||||||| | ||| | || || |||||| |||||||||||||||| ||||||||||||| ||| |
|
|
| T |
3987016 |
ttttagtaaaaagggtttcttttaaagattctattccatgtaattttaacttttcactcacctttgccaaaaaacaacaaccatcatattcagagcgatt |
3987115 |
T |
|
| Q |
209 |
ttagttaaaaatttctcctgcaatagttgtcttgccaatacctcccatgccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaa |
308 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||| || ||| |||||||||||||| ||||||||||||| ||||||||| | |||||||||| |
|
|
| T |
3987116 |
ttggttaaaaatttcttctgcaatagttgtcttgccaatgccaggcataccccaaattccaatcacacggaccttttgtgactctttctttaacaatgaa |
3987215 |
T |
|
| Q |
309 |
ttcaaatgtgcaattgatttgtcaattccaacaagtccttttgagttaactgggtgcttactcaacctcttcaac |
383 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3987216 |
tttaaatgtgcaattgatttgtcaattccaataagtccttttgagttaactgggtgcttactcaacatcttcaac |
3987290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 3801509 - 3801852
Alignment:
| Q |
11 |
atcatcaagaacaataagaaccttcatacgaccaatccttctcacagtataattagacaacccatttggcgaacggattttcacatcttctgctaatagt |
110 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
3801509 |
atcatcaagatcaataagaaccttcatacggccaatccttctatgaatattattagacaacccatttggtgaatcgattttcacatcttcatttaatagg |
3801608 |
T |
|
| Q |
111 |
gtagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaatttt |
210 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||| | |||||||||| | || || ||| || |||||||||||| ||||||||| ||| ||||| |
|
|
| T |
3801609 |
ttagaaaaaagcttttctttttaaattgttattccacgccttcctaattccaaactcacatttgacataaaacaacaaccatcatattcaaagcgatttt |
3801708 |
T |
|
| Q |
211 |
agttaaaaatttctcctgcaatagttgtcttgccaatacctcccatgccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaatt |
310 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| | |||||||| | |||||||||||| |
|
|
| T |
3801709 |
ggttaaatatttcttctgcaatagttgtcttgccaataccgcccataccccaaattccaataacacggacctttcccgactctttgtttaacaatgaatt |
3801808 |
T |
|
| Q |
311 |
caaatgtgcaattgatttgtcaattccaacaagtccttttgagt |
354 |
Q |
| |
|
|||||||||||||| | |||| ||||||| |||||||| ||||| |
|
|
| T |
3801809 |
caaatgtgcaattggtctgtccattccaataagtccttctgagt |
3801852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 9 - 397
Target Start/End: Complemental strand, 3954610 - 3954239
Alignment:
| Q |
9 |
acatcatcaagaacaataagaaccttcatacgaccaatccttctcacagtataattagacaacccatttggcgaacggattttcacatcttctgctaata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
3954610 |
acatcatcaagaacaataagaaccttcatacggccaatccttctctgaatattattagacaacccatttggtgaatcgattttcacatcttctgctaata |
3954511 |
T |
|
| Q |
109 |
gtgtagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaatt |
208 |
Q |
| |
|
|||| |||||||| | ||| | || |||||||||| || || |||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
3954510 |
gtgttgaaaaaagctgttc-----------------cgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaact |
3954428 |
T |
|
| Q |
209 |
ttagttaaaaatttctcctgcaatagttgtcttgccaatacctcccatgccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaa |
308 |
Q |
| |
|
| |||| ||| |||| | ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
3954427 |
tcggttataaacttcttcagcaatagttgtcttgccaatacctcccataccccaaattccaatgacacaaaccttttctgacttttgacgtaacaatgat |
3954328 |
T |
|
| Q |
309 |
ttcaaatgtgcaattgatttgtcaattccaacaagtccttttgagttaactgggtgcttactcaacctcttcaacactagattgatgat |
397 |
Q |
| |
|
| |||||| ||| || |||| ||||||||| | ||||| || ||||| || | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
3954327 |
tctaaatgtccaactggtttggcaattccaatatatccttctgtgttaataggatacttactcaacctcttcaacacaagattgatgat |
3954239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 4218566 - 4218909
Alignment:
| Q |
11 |
atcatcaagaacaataagaaccttcatacgaccaatccttctcacagtataattagacaacccatttggcgaacggattttcacatcttctgctaatagt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| | ||| ||||||||||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
4218566 |
atcatcaagaacaataagaaccttcatacggtcaatccttctatgaatattattagacaacccatttgatgaatcgattttcacatcttcatttaatagg |
4218665 |
T |
|
| Q |
111 |
gtagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaatttt |
210 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| | ||| |||| | || || ||| || |||||||||||| ||||||||||| ||| ||| |
|
|
| T |
4218666 |
ttagaaaaaagcatttcttttaaaaatgttattccacgactttgtaatcccaaactcacatttgacataaaacaacaaccatcatattcagaacaaattt |
4218765 |
T |
|
| Q |
211 |
agttaaaaatttctcctgcaatagttgtcttgccaatacctcccatgccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaatt |
310 |
Q |
| |
|
|| ||| | |||| |||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| | |||||||| | |||||||||||| |
|
|
| T |
4218766 |
ggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaaattccaataacacggacctttcccgactctttgtttaacaatgaatt |
4218865 |
T |
|
| Q |
311 |
caaatgtgcaattgatttgtcaattccaacaagtccttttgagt |
354 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||||||||||||| |
|
|
| T |
4218866 |
caaatgtgcaattggtttgtccattccaataagtccttttgagt |
4218909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 12 - 361
Target Start/End: Original strand, 3809940 - 3810289
Alignment:
| Q |
12 |
tcatcaagaacaataagaaccttcatacgaccaatccttctcacagtataattagacaacccatttggcgaacggattttcacatcttctgctaatagtg |
111 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||| ||| || ||| | ||| ||||| |||||| | | ||||||||||||||||| |||||| |
|
|
| T |
3809940 |
tcatcaagaacgataagaaccttcatgcggccaatccgcctctcaatatcactaggcaaccaatttggtgtatcaattttcacatcttctgccaatagtt |
3810039 |
T |
|
| Q |
112 |
tagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaatttta |
211 |
Q |
| |
|
||||||||||||| | ||| ||| | |||||||||||| ||| | || |||||||||||||| ||||||||||| ||||||||||| ||| ||| |
|
|
| T |
3810040 |
tagaaaaaagtttattttttaaagaatccattccatgtcttgttaactcttcacttaccttttccaagaaacaacaaccatcatattcagaacaaatttg |
3810139 |
T |
|
| Q |
212 |
gttaaaaatttctcctgcaatagttgtcttgccaatacctcccatgccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaattc |
311 |
Q |
| |
|
|| ||| | |||| |||||||||||||||||||||||| ||||| ||||||||||| || ||| || |||||| ||||||||| | ||||||||| ||| |
|
|
| T |
3810140 |
gtcaaataattcttttgcaatagttgtcttgccaataccacccataccccaaattccgataacaggggccttttgtgactctttctttaacaatgatttc |
3810239 |
T |
|
| Q |
312 |
aaatgtgcaattgatttgtcaattccaacaagtccttttgagttaactgg |
361 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
3810240 |
aaatgtgaaatagatttgtcaattccaacaagttcttttgatttaactgg |
3810289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 168 - 358
Target Start/End: Original strand, 3817664 - 3817854
Alignment:
| Q |
168 |
accttttccaaaaaacaacaaccttcatattcagagcaattttagttaaaaatttctcctgcaatagttgtcttgccaatacctcccatgccccaaattc |
267 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || || | ||||| | |||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3817664 |
accttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccccaaattc |
3817763 |
T |
|
| Q |
268 |
caatgacacggaccttttctgactctttttgtaacaatgaattcaaatgtgcaattgatttgtcaattccaacaagtccttttgagttaac |
358 |
Q |
| |
|
|||| |||||||||| |||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
3817764 |
caataacacggacctgttctgactctttctttaacaatgaattcaaatccgcaattggtttgtcaattccaacaagttcttttgagttaac |
3817854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 168 - 358
Target Start/End: Complemental strand, 3933024 - 3932834
Alignment:
| Q |
168 |
accttttccaaaaaacaacaaccttcatattcagagcaattttagttaaaaatttctcctgcaatagttgtcttgccaatacctcccatgccccaaattc |
267 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || || | ||||| | |||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3933024 |
accttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccccaaattc |
3932925 |
T |
|
| Q |
268 |
caatgacacggaccttttctgactctttttgtaacaatgaattcaaatgtgcaattgatttgtcaattccaacaagtccttttgagttaac |
358 |
Q |
| |
|
|||| |||||||||| |||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||||| |
|
|
| T |
3932924 |
caataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggtttgtcaattccaacaagtctttttgatttaac |
3932834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 168 - 314
Target Start/End: Complemental strand, 3919800 - 3919654
Alignment:
| Q |
168 |
accttttccaaaaaacaacaaccttcatattcagagcaattttagttaaaaatttctcctgcaatagttgtcttgccaatacctcccatgccccaaattc |
267 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || || | ||||| | |||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3919800 |
accttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccccaaattc |
3919701 |
T |
|
| Q |
268 |
caatgacacggaccttttctgactctttttgtaacaatgaattcaaa |
314 |
Q |
| |
|
|||| |||||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
3919700 |
caataacacggacctgttctgactctttctttaacaatgaattcaaa |
3919654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 359
Target Start/End: Complemental strand, 3963267 - 3963129
Alignment:
| Q |
221 |
ttctcctgcaatagttgtcttgccaatacctcccatgccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaattcaaatgtgca |
320 |
Q |
| |
|
|||| |||||| ||||||||||||||||| ||||| |||||||| |||| ||||| || | ||||||||||| ||| ||||| || | ||||||| |
|
|
| T |
3963267 |
ttcttctgcaagggttgtcttgccaataccacccataccccaaatcccaacaacacgaacatcttctgactcttggcttaataatgactttagatgtgca |
3963168 |
T |
|
| Q |
321 |
attgatttgtcaattccaacaagtccttttgagttaact |
359 |
Q |
| |
|
|| ||| ||||||||| |||||||||||| ||||| |
|
|
| T |
3963167 |
gtttgttttccaattccaatgagtccttttgagctaact |
3963129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 397
Target Start/End: Original strand, 13397871 - 13398259
Alignment:
| Q |
9 |
acatcatcaagaacaataagaaccttcatacgaccaatccttctcacagtataattagacaacccatttggcgaacggattttcacatcttctgctaata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||| | ||||| ||| ||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
13397871 |
acatcatcaagaacaataagaaccttcatatggccaatccttctctgaatataactaggcaacccatttgatgaatcgatttttacatcttctgctaata |
13397970 |
T |
|
| Q |
109 |
gtgtagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaatt |
208 |
Q |
| |
|
||||||||| ||| |||||||| ||||| | ||||||||| |||||||||| || || |||||| ||||||||||||| |||||||||||||| ||| | |
|
|
| T |
13397971 |
gtgtagaaacaagcttttcttttaaaaacgctattccatgccttcctaattcttcactcacctttgccaaaaaacaacatccttcatattcagaacaaat |
13398070 |
T |
|
| Q |
209 |
ttagttaaaaatttctcctgcaatagttgtcttgccaatacctcccatgccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaa |
308 |
Q |
| |
|
|| |||||||||||| | |||||||||||||| |||||||||||||| |||||||| ||||| || || |||||||||||||||| |||||||||| |
|
|
| T |
13398071 |
ttgattaaaaatttcttcggcaatagttgtctttccaatacctcccataccccaaataccaattacgcgaaccttttctgactcttgatgtaacaatggt |
13398170 |
T |
|
| Q |
309 |
ttcaaatgtgcaattgatttgtcaattccaacaagtccttttgagttaactgggtgcttactcaacctcttcaacactagattgatgat |
397 |
Q |
| |
|
| ||||||||||||| ||| |||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
13398171 |
tctaaatgtgcaattgctttctcaattccaataagtccttttgttttaacagggtgcttattcaacctcttcaacacaagcttgatgat |
13398259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1360 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold1360
Description:
Target: scaffold1360; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 220 - 358
Target Start/End: Complemental strand, 1967 - 1829
Alignment:
| Q |
220 |
tttctcctgcaatagttgtcttgccaatacctcccatgccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaattcaaatgtgc |
319 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||| | ||||||||||||||||| ||| |
|
|
| T |
1967 |
tttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgc |
1868 |
T |
|
| Q |
320 |
aattgatttgtcaattccaacaagtccttttgagttaac |
358 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| ||||| |
|
|
| T |
1867 |
aattggtttgtcaattccaacaagtctttttgatttaac |
1829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 352
Target Start/End: Original strand, 7069135 - 7069266
Alignment:
| Q |
221 |
ttctcctgcaatagttgtcttgccaatacctcccatgccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaattcaaatgtgca |
320 |
Q |
| |
|
|||| |||||||||||||||| |||||||| | ||| |||||||||||||| |||| || | || |||||| |||||||||||| | | | ||| | |
|
|
| T |
7069135 |
ttcttctgcaatagttgtctttccaataccactcataccccaaattccaatagcacgaacatcttgcgactctacttgtaacaatgattctacacgtgaa |
7069234 |
T |
|
| Q |
321 |
attgatttgtcaattccaacaagtccttttga |
352 |
Q |
| |
|
||| |||| ||||||||| |||||||||||| |
|
|
| T |
7069235 |
atttgtttgccaattccaataagtccttttga |
7069266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 7092860 - 7092901
Alignment:
| Q |
8 |
gacatcatcaagaacaataagaaccttcatacgaccaatcct |
49 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
7092860 |
gacatcgtcaagaacaataagaaccttcatacgacgaatcct |
7092901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 359
Target Start/End: Original strand, 7098598 - 7098699
Alignment:
| Q |
258 |
ccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaattcaaatgtgcaattgatttgtcaattccaacaagtccttttgagttaa |
357 |
Q |
| |
|
|||||||||||||| |||| || | || ||||||| |||||||||||| | | |||||||||| ||| ||||||||| ||||||||||||| |||| |
|
|
| T |
7098598 |
ccccaaattccaatagcacgaacatcttgtgactctacttgtaacaatgattctacatgtgcaatttgtttttcaattccatcaagtccttttgaattaa |
7098697 |
T |
|
| Q |
358 |
ct |
359 |
Q |
| |
|
|| |
|
|
| T |
7098698 |
ct |
7098699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 359
Target Start/End: Original strand, 7081698 - 7081828
Alignment:
| Q |
229 |
caatagttgtcttgccaatacctcccatgccccaaattccaatgacacggaccttttctgactctttttgtaacaatgaattcaaatgtgcaattgattt |
328 |
Q |
| |
|
||||| ||||||| |||||||| | ||| |||||||||||||| |||| || | || ||||||| |||||||||||| | || || || ||| ||| |
|
|
| T |
7081698 |
caataattgtctttccaataccactcatcccccaaattccaatagcacgaacatcttgtgactctacttgtaacaatgattccacatatgatatttgttt |
7081797 |
T |
|
| Q |
329 |
gtcaattccaacaagtccttttgagttaact |
359 |
Q |
| |
|
|||||||||| || ||||||||| |||||| |
|
|
| T |
7081798 |
ttcaattccaataactccttttgaattaact |
7081828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 7012977 - 7012932
Alignment:
| Q |
8 |
gacatcatcaagaacaataagaaccttcatacgaccaatccttctc |
53 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
7012977 |
gacatcgtcaagaacaacaagaaccttcatacgacaaagccttctc |
7012932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 7023445 - 7023416
Alignment:
| Q |
8 |
gacatcatcaagaacaataagaaccttcat |
37 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7023445 |
gacatcatcaagaacaataagaaccttcat |
7023416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 7075419 - 7075448
Alignment:
| Q |
8 |
gacatcatcaagaacaataagaaccttcat |
37 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7075419 |
gacatcatcaagaacaataagaaccttcat |
7075448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 7036542 - 7036514
Alignment:
| Q |
9 |
acatcatcaagaacaataagaaccttcat |
37 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7036542 |
acatcatcaagaacaataagaaccttcat |
7036514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 42858991 - 42859033
Alignment:
| Q |
233 |
agttgtcttgccaatacctcccatgccccaaattccaatgaca |
275 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
42858991 |
agttgtcttcccaataccgcccatgccccaaatgccaatgaca |
42859033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University