View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21363_high_4 (Length: 347)
Name: NF21363_high_4
Description: NF21363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21363_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 4 - 330
Target Start/End: Original strand, 280051 - 280375
Alignment:
| Q |
4 |
ggagaagcataggttaatggtcaaagtattggaaggtattggcctgcaatgcttgctgaaaataaaggatgcagtgacacatgtgattatagaggagaat |
103 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
280051 |
ggagaagcatgggttaatggtcaaagtattggaaggtattggcctgcaatgcttgctgaaaataaaggatgcagtgacacatgtgattatagaggagaat |
280150 |
T |
|
| Q |
104 |
ataatgctgataaatgtttgagtggttgtggagaaccatctcaaaggttttaccatgtgccaaggtcattcttaaatatcgatgtaaacacgttggtttt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
280151 |
ataatgctgataaatgtttgagtggttgtggagaaccatctcaaaggttttaccatgtgccaaggtcattcttaaataatgatgtaaacacgttggtttt |
280250 |
T |
|
| Q |
204 |
gtttgaggaaatgggttttggtgcaacccctttcaatgcgtctatccaaacaattaccattggttctatatgtgcaactgcagattatgaaaaaacccta |
303 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
280251 |
gtttgaggaaatgggttttgatgcaacccctttcaatgcgtctgtccaaacaattaccattggttc--tatgtgcaactgcagattatgaaaaaacccta |
280348 |
T |
|
| Q |
304 |
gaattgaaatgccctgagggaaaaact |
330 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
280349 |
gaattgaaatgccctgagggaaaaact |
280375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 290571 - 290657
Alignment:
| Q |
160 |
gtgccaaggtcattcttaaatatcgatgtaaacacgttggttttgtttgaggaaatgggttttggtgcaacccctttcaatgcgtct |
246 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||| |||||||| || ||||| | |||| | ||||||||||| |||| |
|
|
| T |
290571 |
gtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagagctgggtctaggtgaaggccctttcaatgtgtct |
290657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 24525623 - 24525709
Alignment:
| Q |
160 |
gtgccaaggtcattcttaaatatcgatgtaaacacgttggttttgtttgaggaaatgggttttggtgcaacccctttcaatgcgtct |
246 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||| ||||| |||||||||||| ||||| | |||| | ||||||||||| |||| |
|
|
| T |
24525623 |
gtgccaaggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggtctgggtgaaggccctttcaatgtgtct |
24525709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 24532295 - 24532354
Alignment:
| Q |
160 |
gtgccaaggtcattcttaaatatcgatgtaaacacgttggttttgtttgaggaaatgggt |
219 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
24532295 |
gtgccaaggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggt |
24532354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 24525552 - 24525586
Alignment:
| Q |
8 |
aagcataggttaatggtcaaagtattggaaggtat |
42 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
24525552 |
aagcatgggttaatggtcaaagtattggaaggtat |
24525586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University