View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21364_high_10 (Length: 324)

Name: NF21364_high_10
Description: NF21364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21364_high_10
NF21364_high_10
[»] chr2 (2 HSPs)
chr2 (20-89)||(31837376-31837445)
chr2 (154-206)||(31837510-31837562)
[»] chr7 (2 HSPs)
chr7 (20-89)||(31455922-31455991)
chr7 (154-206)||(31456057-31456109)
[»] chr5 (3 HSPs)
chr5 (20-89)||(18440900-18440969)
chr5 (154-207)||(18440782-18440835)
chr5 (20-75)||(23319819-23319874)
[»] chr8 (8 HSPs)
chr8 (21-89)||(31508107-31508176)
chr8 (21-89)||(18205197-18205266)
chr8 (20-85)||(19445737-19445802)
chr8 (20-85)||(19535275-19535340)
chr8 (158-207)||(19445874-19445924)
chr8 (158-207)||(19535153-19535203)
chr8 (158-206)||(18205335-18205386)
chr8 (158-206)||(31508246-31508295)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 31837376 - 31837445
Alignment:
Q  20 tttatgacatctcaaacaataaattattaatttaaatatataattttggcatgatatttgtttataaatc 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31837376 tttatgacatctcaaacaataaattattaatttaaatatataattttggcatgatatttgtttataaatc 31837445  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 31837510 - 31837562
Alignment:
Q  154 gttcctatcacaaatcaatttcttgaaattttttaatatatcattttgtaaaa 206  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31837510 gttcctatcacaaatcaatttcttgtaattttttaatatatcattttgtaaaa 31837562  T

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Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 31455922 - 31455991
Alignment:
Q  20 tttatgacatctcaaacaataaattattaatttaaatatataattttggcatgatatttgtttataaatc 89  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31455922 tttatgacatctcaaacaataaatttttaatttaaatatataattttggcatgatatttgtttataaatc 31455991  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 31456057 - 31456109
Alignment:
Q  154 gttcctatcacaaatcaatttcttgaaattttttaatatatcattttgtaaaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31456057 gttcctatcacaaatcaatttcttgaaattttttaatatatcattttgtaaaa 31456109  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 18440969 - 18440900
Alignment:
Q  20 tttatgacatctcaaacaataaattattaatttaaatatataattttggcatgatatttgtttataaatc 89  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18440969 tttatgacatctcaaacaataaatttttaatttaaatatataattttggcatgatatttgtttataaatc 18440900  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 18440835 - 18440782
Alignment:
Q  154 gttcctatcacaaatcaatttcttgaaattttttaatatatcattttgtaaaat 207  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18440835 gttcctatcacaaatcaatttcttgaaaatttttaatatatcattttgtaaaat 18440782  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 23319874 - 23319819
Alignment:
Q  20 tttatgacatctcaaacaataaattattaatttaaatatataattttggcatgata 75  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  23319874 tttatgacatcccaaacaataaatttttaatttaaatatataattttggcatgata 23319819  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 31508107 - 31508176
Alignment:
Q  21 ttatgacatctcaaacaataaat-tattaatttaaatatataattttggcatgatatttgtttataaatc 89  Q
    ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  31508107 ttatgacatctcaaataataaatattttaatttaaatatataattttggcatgatatttgtttataaatc 31508176  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 18205197 - 18205266
Alignment:
Q  21 ttatgacatctcaaacaataaat-tattaatttaaatatataattttggcatgatatttgtttataaatc 89  Q
    ||||||||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||||||||||    
T  18205197 ttatgacatctcaaataataaatattttaatttaaatatacaattttggcatgatatttgtttataaatc 18205266  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 19445737 - 19445802
Alignment:
Q  20 tttatgacatctcaaacaataaat-tattaatttaaatatataattttggcatgatatttgtttata 85  Q
    |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  19445737 tttatgacatctcaaacaataaatattttaatttaaatatataa-tttggcatgatatttgtttata 19445802  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 19535340 - 19535275
Alignment:
Q  20 tttatgacatctcaaacaataaat-tattaatttaaatatataattttggcatgatatttgtttata 85  Q
    |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  19535340 tttatgacatctcaaacaataaatattttaatttaaatatataa-tttggcatgatatttgtttata 19535275  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 19445874 - 19445924
Alignment:
Q  158 ctatcacaaatcaatttcttgaaa-ttttttaatatatcattttgtaaaat 207  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  19445874 ctatcgcaaatcaatttcttgaaatttttttaatatatcattttataaaat 19445924  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 19535203 - 19535153
Alignment:
Q  158 ctatcacaaatcaatttcttgaaatt-ttttaatatatcattttgtaaaat 207  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| ||||||    
T  19535203 ctatcgcaaatcaatttcttgaaatttttttaatatatcattttataaaat 19535153  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 18205335 - 18205386
Alignment:
Q  158 ctatcacaaatcaatttcttgaaattttttaata---tatcattttgtaaaa 206  Q
    ||||||||||||||||||||||| ||||||||||   |||||||||||||||    
T  18205335 ctatcacaaatcaatttcttgaatttttttaatatactatcattttgtaaaa 18205386  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 31508246 - 31508295
Alignment:
Q  158 ctatcacaaatcaatttcttgaaat-tttttaatatatcattttgtaaaa 206  Q
    ||||||||||||||||||||||| | | ||||||||||||||||||||||    
T  31508246 ctatcacaaatcaatttcttgaattctctttaatatatcattttgtaaaa 31508295  T

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