View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21364_high_12 (Length: 308)
Name: NF21364_high_12
Description: NF21364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21364_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 28 - 292
Target Start/End: Complemental strand, 1154184 - 1153920
Alignment:
| Q |
28 |
caaaggctaaggttcttcttcttacattttcctgatttctggattatcacttaattgtgttcaatttgctagtaacaagtaattaattatttggtactgt |
127 |
Q |
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| T |
1154184 |
caaaggctaaggttcttcttcttacattttcctgatttctggattatcacttaattgtgttcaatttgctagtaacaagtaattaattatctggtactgt |
1154085 |
T |
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| Q |
128 |
tttgtgcagcttggtattgtgctgggaaaggctaagagtggtgaccagagtaccgatgcttcctcagagtagtggaactgacaggagatgatgaaactct |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1154084 |
tttgtgcagcttggtattgtgctgggaaaggctaagagtggtgaccagagtactgatgcttcctcagagtagtggaactgacaggagatgatgaaactct |
1153985 |
T |
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| Q |
228 |
actgcttgtagagtactgtgtgtaataaactgaatttgtggtgtagaatgtagatagatatatgt |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1153984 |
actgcttgtagagtactgtgtgtaataaactgaatttgtggtgtagaatgtagatagatatatgt |
1153920 |
T |
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