View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21364_high_3 (Length: 493)
Name: NF21364_high_3
Description: NF21364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21364_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 476
Target Start/End: Complemental strand, 41916726 - 41916259
Alignment:
| Q |
13 |
acatcatcaccgacattatcaaacacaaaaacactgatattcttagtaatggaacgattaatggagctttgatttggctccaaatcaaagaaatctgcat |
112 |
Q |
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| T |
41916726 |
acatcatcaccgacattatcaaacacaaaaacactgatattcttagtaatggaacgattaatggagctttgatttggctccaaatcaaagaaatctgcat |
41916627 |
T |
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| Q |
113 |
ggttaggtcatcttttgctccatgtaatgcaaaagggatagtagtagaagaaaaacgatccatttgaaatagtagtttttgacaaaaataaaagagaaga |
212 |
Q |
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| T |
41916626 |
ggttaggtcatcttttgctccttgtaatgcaaaagggatagtagtagaagaaaaacgatccatttgaaatagtagtttttgacaaaaacaaaagagaaga |
41916527 |
T |
|
| Q |
213 |
atgagaaagacaaagatgtgaacaatggttgaagacaaacactaatagatacaaaagagtttaaaggaatcaactttgttaaagaaacaggaatatttgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41916526 |
atgagaaagacaaagatgtgaacaatggttgaagacaaacactaatagatacaaaagagtttaaaggaatcaactttgtt-aagaaacaggaatatttgt |
41916428 |
T |
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| Q |
313 |
-----ttttgtaataaattgttatgttttgcttctggtccacgcaaaacaatgtgagttactctactctagagagtaaagaaaaaccagttcctagatct |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41916427 |
ttttgttttgtaataaattgttatgttttgcttctggtccacgcaaaacaatgtgagttactctactctagagagtaaagaaaaaccagttcctagatct |
41916328 |
T |
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| Q |
408 |
caaaactaacaaataacnnnnnnnagcttttcatgtgactaggtatgcttcatctgaaatggaaatatt |
476 |
Q |
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| T |
41916327 |
caaaactaacaaacaactttttttagcttttcatgtgactaggtatgcttcatctgaaatggaaatatt |
41916259 |
T |
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