View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21364_high_4 (Length: 433)
Name: NF21364_high_4
Description: NF21364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21364_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 36 - 194
Target Start/End: Original strand, 3298108 - 3298266
Alignment:
| Q |
36 |
gatgcaagtgacgatataatcttgtcaccttttatgtgaaatgttgtgcaagtaacacagctaaaagtaacaagttgctgagtcaaaaataataaaagga |
135 |
Q |
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| T |
3298108 |
gatgcaagtgacgatataatcttgtcaccttttatgtgaaatgttgtgcaagtaacacagctaaaagtaacaagttgctgagtcaaaaataataaaagga |
3298207 |
T |
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| Q |
136 |
acaagtggatgccctttttgaaataataagtggaagtcattttaagcgattaaagatga |
194 |
Q |
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| T |
3298208 |
acaagtggatgccctttttgaaataataagtggaagtcattttaagagattaaagatga |
3298266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 245 - 416
Target Start/End: Original strand, 3298320 - 3298489
Alignment:
| Q |
245 |
gaaaattcatatattcaaaataattaagatagaaggnnnnnnnnnntctccattctcaaattcattcatcttgtttcatgttgtttttgtccttttttct |
344 |
Q |
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| T |
3298320 |
gaaaattcatatattcaaa-taattaagatagaaggaaaaaaaat-tctccattctcaagttcattcatcttgtttcatgttgtttttgtccttttttcc |
3298417 |
T |
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| Q |
345 |
agcattgttaatgtaaactttgatgcagggaaattatgcataatgtaataagtacaatatatagttgggact |
416 |
Q |
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| T |
3298418 |
agcattgttaatgtaaactttgatgcagggaaattatgcataatgtaataagtacaatatatagttgggact |
3298489 |
T |
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