View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21364_high_8 (Length: 331)
Name: NF21364_high_8
Description: NF21364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21364_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 331
Target Start/End: Original strand, 40421507 - 40421830
Alignment:
| Q |
8 |
ccaagaatattaaggcaaattctatgatatacctaaaattttcggtgtaccaaaaataaatttgtaccttcagaatttggtagaatcgtttcagaagcag |
107 |
Q |
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| T |
40421507 |
ccaacaatattaagacaaattctatggtatacttaaaattttcggtgtaccaaaaataaatttgtaccttcagagtttggtagaatcgtttcagaagcag |
40421606 |
T |
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| Q |
108 |
aaacaagatgaaataagggacgttcaagtgttgtgtcgggatttgatccaacgatcacagacgaagcaccatcaccaaaaagtgcttgtccaactaagga |
207 |
Q |
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| T |
40421607 |
aaacaagatgaaataatggacgttcaagtgttgtgttgggatttgatccaacgatcacagacgaagcaccatcaccaaaaagtgcttgtccaactaaaga |
40421706 |
T |
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| Q |
208 |
atccaagtgtgtttcattgggcccacgaaaagtaacaacagttatttcagaacacacgacgaggacacgtgcaccaatgttattctcagctagatctttg |
307 |
Q |
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| T |
40421707 |
atccaagtgtgtttcattgggcccacgaaaagtaacaacagttatttcagaacacacaacgaggacacgtgcaccaatgttattctcagctagatctttg |
40421806 |
T |
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| Q |
308 |
gcaagacgaagaacggttccacca |
331 |
Q |
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| T |
40421807 |
gcaagacgaagaacggttccacca |
40421830 |
T |
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