View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21364_low_1 (Length: 558)
Name: NF21364_low_1
Description: NF21364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21364_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 49033676 - 49033279
Alignment:
| Q |
8 |
agaagaagaagaaggagtcatcatcatcctctgcgcccagtcacatggaagagattcctgtggactactataccgatgttcgcccactctgtataaacga |
107 |
Q |
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| T |
49033676 |
agaagaagaagaaggagtcatcatcatcctctgcgcccagtcgcatggaagagattcatgtggactactataccgatgttcgcccactctgtataaacga |
49033577 |
T |
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| Q |
108 |
ttattgggctcccaaattggatcaattagagaaacgtcttcgtcacctttcacaagatactctttgatttcatttcttggaaaaacatcatgttcattac |
207 |
Q |
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| T |
49033576 |
ttattggggtcccaaattggatcaattggagaaacgtcttcgtcacctttcacaagatactctttgatttcatttc-----atttcatcatgttcattac |
49033482 |
T |
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| Q |
208 |
taccattctacggaaatatg--------------nnnnnnngtcactatttgcaccattttaattttgattctactaaac---tgttatagtaagcaagt |
290 |
Q |
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| T |
49033481 |
taccattctacggaaatatgtttttttttttttttttttttgtcactattcgcaccattttaaatttgattctactaaactgttgttatagtaggcaagt |
49033382 |
T |
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| Q |
291 |
acttgacgtgtacaagtcgccttccatttccaatctaccatgaattgttccaatcctatacctattataaccaatttcctcattattttatctttagaac |
390 |
Q |
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| T |
49033381 |
acttgccgtgtacgagtcgccttccatttccaatctaccatgaattgttccaatcctttacctattataaccaatttcctcattattttatctctaaaac |
49033282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 455 - 517
Target Start/End: Complemental strand, 49032268 - 49032206
Alignment:
| Q |
455 |
gtttgtgaattgccaaaactacatttaagcctacttttaattagtcctattataaatcttcaa |
517 |
Q |
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| T |
49032268 |
gtttgtgaattgccaaaactacatttaagcctacttttaattagtcctattataaatcttcaa |
49032206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 49032306 - 49032271
Alignment:
| Q |
388 |
aaccattacattttctcatttctattttttaataat |
423 |
Q |
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| T |
49032306 |
aaccattacattttctcatttctattttttaataat |
49032271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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