View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21364_low_10 (Length: 334)
Name: NF21364_low_10
Description: NF21364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21364_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 14248648 - 14248965
Alignment:
| Q |
1 |
atgatttgtggactcgtcctccacattacaaaaaacacaaatagagctcgcatttgttggcaatgtatttctcctcactaaattcactctagttggtact |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
14248648 |
atgatttgtggactcctcctccacattacaaaaaacacaaatagagctcgcatttgttggcaatgtatttctccgcactaaattcactctagtgggtact |
14248747 |
T |
|
| Q |
101 |
cgactaagcaaacccttccaagaaagagccaccgccttagacggagccggactcttccaaatttggccgaaaacccgatactccgcctctccccactcat |
200 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14248748 |
cgattaagaaaacccttccaagaaagagccaccgccttagacggagccggactcttccaaatttggccgaaaacccgatactccgcctctccccactcat |
14248847 |
T |
|
| Q |
201 |
cctccaccagcgatacctccgccaacttcttgtaggttaaactaaccgtgaagcggcctccatcctccaacttccaacaccactcgtcctccccttgagt |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14248848 |
cctccaccagcaatacctccgccaacttcttgtaggttaaactaaccgtgaagcggcctccgtcctccaacttccaacaccactcgtcctccccttgagt |
14248947 |
T |
|
| Q |
301 |
cctatcaaaaccatgaag |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14248948 |
cctatcaaaaccatgaag |
14248965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 13311501 - 13311383
Alignment:
| Q |
78 |
ctaaattcactctagttggtactcgactaagcaaacccttccaagaaagagccaccgccttagacggagccggactcttccaaatttggccgaaaacccg |
177 |
Q |
| |
|
||||||||||||||||||| || || | |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || |||||| | |
|
|
| T |
13311501 |
ctaaattcactctagttggaacacggtttagcaaacccttccaagaaagagtcaccgccttagagggagccggactcttccaaatttgaccaaaaacctg |
13311402 |
T |
|
| Q |
178 |
atactccgcctctccccac |
196 |
Q |
| |
|
|| ||||||||| |||||| |
|
|
| T |
13311401 |
attctccgcctcaccccac |
13311383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 24 - 292
Target Start/End: Complemental strand, 29298615 - 29298347
Alignment:
| Q |
24 |
cattacaaaaaacacaaatagagctcgcatttgttggcaatgtatttctcctcactaaattcactctagttggtactcgactaagcaaacccttccaaga |
123 |
Q |
| |
|
||||||| || |||||| ||| || ||||||| ||||||| |||||||| || ||||||| || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
29298615 |
cattacacaacacacaattaggactagcatttggcggcaatgcatttctccgcaataaattccctgtagttggtactcgattaagcaaacccttccaaga |
29298516 |
T |
|
| Q |
124 |
aagagccaccgccttagacggagccggactcttccaaatttggccgaaaacccgatactccgcctctccccactcatcctccaccagcgatacctccgcc |
223 |
Q |
| |
|
||||||||| | ||||| |||| |||||| |||||||||||| | |||||||||| |||||||||||||||| | |||| | | |||||| | |||||| |
|
|
| T |
29298515 |
gagagccaccactttagatggagtcggacttttccaaatttgggcaaaaacccgattctccgcctctccccacacctccttcgcaagcgatgcttccgcc |
29298416 |
T |
|
| Q |
224 |
aacttcttgtaggttaaactaaccgtgaagcggcctccatcctccaacttccaacaccactcgtcctcc |
292 |
Q |
| |
|
|||||||| || | ||||||||||| || | ||||| | ||||||||||||||||||| | |||||| |
|
|
| T |
29298415 |
aacttcttatatataaaactaaccgtaaaacaacctcccttctccaacttccaacaccacacatcctcc |
29298347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 299
Target Start/End: Original strand, 50192514 - 50192735
Alignment:
| Q |
78 |
ctaaattcactctagttggtactcgactaagcaaacccttccaagaaagagccaccgccttagacggagccggactcttccaaatttggccgaaaacccg |
177 |
Q |
| |
|
||||||||||||||||||| || ||| | ||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| | || || || |
|
|
| T |
50192514 |
ctaaattcactctagttggaacacgatttagcaaacccttccaagaaagagccaccaccctagatggagccggactcttccaaattttactaaacactcg |
50192613 |
T |
|
| Q |
178 |
atactccgcctctccccactcatcctccaccagcgatacctccgccaacttcttgtaggttaaactaaccgtgaagcggcctccatcctccaacttccaa |
277 |
Q |
| |
|
|| ||||||| | |||||| ||| ||| | | ||| || | |||||||||||||||||| ||| |||||| |||| |||| ||||||||||||||| |
|
|
| T |
50192614 |
attctccgccacaccccacctatcttccccaatcgacgccgctgccaacttcttgtaggttgaaccaaccgtaaagcaacctctatcctccaacttccac |
50192713 |
T |
|
| Q |
278 |
caccactcgtcctccccttgag |
299 |
Q |
| |
|
| |||||| || |||||||||| |
|
|
| T |
50192714 |
ctccactcatcttccccttgag |
50192735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 41304387 - 41304287
Alignment:
| Q |
105 |
taagcaaacccttccaagaaagagccaccgccttagacggagccggactcttccaaatttggccgaaaacccgatactccgcctctccccactcatcctc |
204 |
Q |
| |
|
||||||| ||||| || |||||||||||||| |||||||| ||||||||||||||||||| || || || || | ||| ||||||||||||||||||| |
|
|
| T |
41304387 |
taagcaacccctttcatgaaagagccaccgctttagacggtgccggactcttccaaatttccccaaacacacggcattcctcctctccccactcatcctc |
41304288 |
T |
|
| Q |
205 |
c |
205 |
Q |
| |
|
| |
|
|
| T |
41304287 |
c |
41304287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 3077835 - 3077884
Alignment:
| Q |
117 |
tccaagaaagagccaccgccttagacggagccggactcttccaaatttgg |
166 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
3077835 |
tccacgaaagtgccaccaccttagacggagccggacttttccaaagttgg |
3077884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 32123243 - 32123304
Alignment:
| Q |
114 |
ccttccaagaaagagccaccgccttagacggagccggactcttccaaatttggccgaaaacc |
175 |
Q |
| |
|
|||||||||| | ||||||| |||| || |||||| |||||||||||| ||| ||||||||| |
|
|
| T |
32123243 |
ccttccaagagaaagccaccaccttggagggagccagactcttccaaacttgaccgaaaacc |
32123304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University