View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21364_low_17 (Length: 285)

Name: NF21364_low_17
Description: NF21364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21364_low_17
NF21364_low_17
[»] chr7 (18 HSPs)
chr7 (18-271)||(7546148-7546400)
chr7 (202-251)||(36314629-36314678)
chr7 (211-251)||(38134417-38134457)
chr7 (200-251)||(21247736-21247787)
chr7 (196-251)||(38143231-38143286)
chr7 (193-259)||(5835247-5835313)
chr7 (202-251)||(44172892-44172941)
chr7 (211-259)||(4909151-4909199)
chr7 (215-259)||(37775982-37776026)
chr7 (211-250)||(19930952-19930991)
chr7 (201-251)||(2525845-2525895)
chr7 (217-251)||(11700811-11700845)
chr7 (201-251)||(31808510-31808560)
chr7 (211-256)||(1415573-1415618)
chr7 (214-251)||(28943428-28943465)
chr7 (213-249)||(7133291-7133327)
chr7 (196-248)||(10893865-10893917)
chr7 (211-251)||(30606075-30606115)
[»] chr1 (23 HSPs)
chr1 (140-251)||(33202911-33203020)
chr1 (139-251)||(19637776-19637886)
chr1 (211-251)||(30847731-30847771)
chr1 (153-251)||(5898221-5898317)
chr1 (153-271)||(40258888-40259004)
chr1 (201-251)||(6427358-6427408)
chr1 (213-267)||(11412781-11412835)
chr1 (214-251)||(3921675-3921712)
chr1 (211-264)||(17425104-17425157)
chr1 (217-269)||(40747790-40747842)
chr1 (201-253)||(41017405-41017457)
chr1 (211-258)||(2445871-2445918)
chr1 (196-251)||(7988447-7988502)
chr1 (216-251)||(11571593-11571628)
chr1 (214-264)||(16812538-16812588)
chr1 (217-259)||(29230065-29230107)
chr1 (215-264)||(17080896-17080945)
chr1 (139-251)||(38078602-38078712)
chr1 (211-251)||(351095-351135)
chr1 (215-247)||(14332420-14332452)
chr1 (215-259)||(18946049-18946093)
chr1 (203-251)||(42325568-42325616)
chr1 (215-259)||(43942324-43942368)
[»] chr4 (29 HSPs)
chr4 (139-258)||(21345474-21345591)
chr4 (140-247)||(34589645-34589753)
chr4 (171-251)||(56049885-56049964)
chr4 (211-265)||(18513252-18513306)
chr4 (169-251)||(24846747-24846829)
chr4 (211-263)||(14465305-14465357)
chr4 (196-251)||(33950144-33950199)
chr4 (213-251)||(5654604-5654642)
chr4 (213-251)||(10546156-10546194)
chr4 (215-265)||(19262939-19262989)
chr4 (214-251)||(27096015-27096052)
chr4 (211-250)||(11110212-11110251)
chr4 (212-251)||(43299983-43300022)
chr4 (212-251)||(43300624-43300663)
chr4 (196-251)||(51673438-51673493)
chr4 (214-252)||(2976701-2976739)
chr4 (200-258)||(7214522-7214580)
chr4 (201-239)||(12310835-12310873)
chr4 (213-251)||(20743291-20743329)
chr4 (213-251)||(31243561-31243599)
chr4 (171-245)||(44362680-44362754)
chr4 (215-252)||(8457932-8457969)
chr4 (196-245)||(13307891-13307940)
chr4 (139-239)||(40224439-40224537)
chr4 (205-250)||(46180941-46180986)
chr4 (216-265)||(50848319-50848368)
chr4 (217-249)||(26276026-26276058)
chr4 (211-251)||(31552468-31552508)
chr4 (202-258)||(36635325-36635381)
[»] chr3 (20 HSPs)
chr3 (196-251)||(20691327-20691382)
chr3 (202-259)||(21478683-21478740)
chr3 (194-251)||(40150565-40150622)
chr3 (201-251)||(11093578-11093628)
chr3 (213-251)||(12704670-12704708)
chr3 (217-259)||(41319327-41319369)
chr3 (176-248)||(20141107-20141178)
chr3 (139-250)||(20503474-20503583)
chr3 (196-266)||(7928443-7928513)
chr3 (171-245)||(14338454-14338528)
chr3 (235-265)||(15983901-15983931)
chr3 (169-239)||(35222958-35223028)
chr3 (213-251)||(52369783-52369821)
chr3 (215-251)||(9210840-9210876)
chr3 (211-251)||(9624649-9624689)
chr3 (152-251)||(10954960-10955057)
chr3 (215-251)||(21149075-21149111)
chr3 (184-248)||(23271978-23272042)
chr3 (217-257)||(40017386-40017426)
chr3 (203-239)||(47678861-47678897)
[»] chr8 (19 HSPs)
chr8 (196-258)||(18646173-18646235)
chr8 (211-252)||(29198490-29198531)
chr8 (203-251)||(3508060-3508108)
chr8 (213-265)||(40063945-40063997)
chr8 (211-258)||(37225754-37225801)
chr8 (211-251)||(34201057-34201097)
chr8 (200-251)||(12559106-12559157)
chr8 (196-251)||(12606825-12606880)
chr8 (212-251)||(12985400-12985439)
chr8 (200-251)||(31548293-31548344)
chr8 (154-239)||(44462151-44462234)
chr8 (154-239)||(44469684-44469767)
chr8 (200-269)||(33382019-33382088)
chr8 (218-258)||(1591300-1591340)
chr8 (219-251)||(6211456-6211488)
chr8 (217-249)||(10441213-10441245)
chr8 (218-258)||(14227223-14227263)
chr8 (211-251)||(22770970-22771010)
chr8 (211-251)||(31236588-31236628)
[»] chr5 (18 HSPs)
chr5 (201-251)||(28296336-28296386)
chr5 (202-251)||(38749565-38749614)
chr5 (139-251)||(11596399-11596506)
chr5 (169-259)||(28588643-28588733)
chr5 (213-259)||(31264438-31264484)
chr5 (211-265)||(38806859-38806913)
chr5 (214-259)||(2039863-2039908)
chr5 (184-233)||(18145287-18145336)
chr5 (215-251)||(16199300-16199336)
chr5 (211-251)||(16881144-16881184)
chr5 (212-248)||(43208286-43208322)
chr5 (213-251)||(18607110-18607148)
chr5 (214-251)||(4344750-4344787)
chr5 (218-259)||(9449469-9449510)
chr5 (202-251)||(19737484-19737533)
chr5 (201-258)||(32444767-32444824)
chr5 (211-251)||(2577191-2577231)
chr5 (219-259)||(39424641-39424681)
[»] chr2 (13 HSPs)
chr2 (169-251)||(18570980-18571062)
chr2 (202-258)||(28121551-28121607)
chr2 (212-251)||(31026703-31026742)
chr2 (217-260)||(40681981-40682024)
chr2 (213-251)||(10535772-10535810)
chr2 (201-247)||(45000847-45000893)
chr2 (215-260)||(26787813-26787858)
chr2 (218-251)||(30563417-30563450)
chr2 (211-251)||(2846920-2846960)
chr2 (211-259)||(4229419-4229467)
chr2 (213-249)||(11308017-11308053)
chr2 (211-251)||(19613624-19613664)
chr2 (211-239)||(37402095-37402123)
[»] chr6 (21 HSPs)
chr6 (196-256)||(33419176-33419236)
chr6 (211-249)||(9024187-9024225)
chr6 (198-252)||(33340943-33340997)
chr6 (198-252)||(35125101-35125155)
chr6 (214-251)||(2493428-2493465)
chr6 (198-239)||(18612641-18612682)
chr6 (215-259)||(4859128-4859172)
chr6 (178-249)||(4864073-4864144)
chr6 (201-252)||(9617441-9617492)
chr6 (201-251)||(17168902-17168952)
chr6 (213-251)||(34446573-34446611)
chr6 (218-251)||(2140499-2140532)
chr6 (201-250)||(9629392-9629441)
chr6 (215-248)||(10157995-10158028)
chr6 (214-251)||(29049893-29049930)
chr6 (192-249)||(29670903-29670959)
chr6 (211-259)||(31563810-31563859)
chr6 (139-251)||(34595142-34595252)
chr6 (196-269)||(13360368-13360443)
chr6 (211-251)||(30866155-30866195)
chr6 (211-251)||(34541761-34541801)
[»] scaffold0376 (1 HSPs)
scaffold0376 (201-265)||(6306-6370)
[»] scaffold0011 (1 HSPs)
scaffold0011 (200-251)||(240021-240072)
[»] scaffold0022 (1 HSPs)
scaffold0022 (201-251)||(99901-99951)
[»] scaffold0320 (1 HSPs)
scaffold0320 (202-251)||(17038-17087)
[»] scaffold0571 (1 HSPs)
scaffold0571 (215-251)||(7698-7734)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 7546400 - 7546148
Alignment:
Q  18 atattatgttgccaaaaaacagatttacaaacatattattgagtggaagagagagtagtcaggaagatattctttagaatctttttaagccatagtattg 117  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7546400 atattatgttaccaaaaa-cagttttacaaacatattattgagtggaagagagagtagtcaggaagatattctttagaatcattttaagccatagtattg 7546302  T
Q  118 gactcgcaacactgagagttgtatgaagcacaggtactcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatga 217  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  7546301 gactcgcaacactgagagttgtatgaagcacaggtactcattggattaggcgtgtgtcccggtgttagataggtatcatgtccgacaccaacccatatga 7546202  T
Q  218 ttacattgaattatgtcattttgtcaaattattactggtgtccgtgtctgtgct 271  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7546201 tcacattgaattatgtcattttgtcaaattattactggtgtccgtgtctgtgct 7546148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 36314629 - 36314678
Alignment:
Q  202 acaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||||||||    
T  36314629 acaccaacacatatgattacattgaaatatgtcattttctcaaattatta 36314678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 38134417 - 38134457
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  38134417 catatgattacattgaattatgtcattttctcaaattatta 38134457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 21247736 - 21247787
Alignment:
Q  200 tgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||| || ||||||||||||||||| |||||||| |||||||||||    
T  21247736 tgacaccaacacacatgattacattgaattacgtcattttctcaaattatta 21247787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 38143286 - 38143231
Alignment:
Q  196 tgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||    
T  38143286 tgtctgacaccaacacatataattacattaaattatgtgattttttcaaattatta 38143231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 5835313 - 5835247
Alignment:
Q  193 tcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    |||||||||||||| || ||||| |||||| |||||||||| ||||| ||||| ||||| |||||||    
T  5835313 tcatgtctgacaccgacacatataattacactgaattatgttattttctcaaactattagtggtgtc 5835247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 44172892 - 44172941
Alignment:
Q  202 acaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||| ||| ||| ||||||||||||||||||||||||| |||||||||||    
T  44172892 acacaaacacatgtgattacattgaattatgtcattttctcaaattatta 44172941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 4909199 - 4909151
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    |||||||||||| |||||||||| ||||| ||||||||||| |||||||    
T  4909199 catatgattacaatgaattatgtaattttctcaaattattattggtgtc 4909151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 37776026 - 37775982
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||    
T  37776026 tgattacatttaattatgtcattttctcaaattactactggtgtc 37775982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 19930952 - 19930991
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatt 250  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  19930952 catataattacattgaattatgtcattttatcaaattatt 19930991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 2525845 - 2525895
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||| || |||||||||| |||||||||||||||||  |||||||||||    
T  2525845 gacaccgacacatatgattatattgaattatgtcatttgctcaaattatta 2525895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 11700845 - 11700811
Alignment:
Q  217 attacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||||||| |||||||||||||||||    
T  11700845 attacattgaattatgtgattttgtcaaattatta 11700811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 31808510 - 31808560
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||| ||| |||||||||||| || ||||||||| |||||||||||    
T  31808510 gacaccaacacatgtgattacattgacttgtgtcattttctcaaattatta 31808560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 1415618 - 1415573
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattattactggt 256  Q
    |||||||||||||||| || ||||||||| ||||||||||| ||||    
T  1415618 catatgattacattgatttgtgtcattttttcaaattattattggt 1415573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 28943428 - 28943465
Alignment:
Q  214 atgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  28943428 atgattacattgagttatgtcattttatcaaattatta 28943465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 7133291 - 7133327
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattat 249  Q
    |||||||||| |||||||||||||||| |||||||||    
T  7133291 tatgattacactgaattatgtcattttctcaaattat 7133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 10893865 - 10893917
Alignment:
Q  196 tgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaatta 248  Q
    |||| ||||||||| ||| |||||||||| |||||||||||||| | ||||||    
T  10893865 tgtcagacaccaacacatgtgattacattcaattatgtcattttcttaaatta 10893917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 30606075 - 30606115
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||| |||||||||||||||||||||| | |||||||||    
T  30606075 catatggttacattgaattatgtcattttttgaaattatta 30606115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 251
Target Start/End: Complemental strand, 33203020 - 33202911
Alignment:
Q  140 atgaagcacaggtactcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcatttt 239  Q
    ||||||||||  ||||||||||||||||||  |||| ||||||  |||| ||||| |||||||||||||  |||||||||||||||| ||||||||||||    
T  33203020 atgaagcacatatactcctcggattaggcg--tgtcacggtgtcggatatgtatcgtgtctgacaccaaaacatatgattacattgatttatgtcatttt 33202923  T
Q  240 gtcaaattatta 251  Q
     | |||||||||    
T  33202922 ttaaaattatta 33202911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 19637886 - 19637776
Alignment:
Q  139 tatgaagcacaggtactcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattt 238  Q
    ||||| |||||  |||||||||||||||| ||||  ||||||||  |||| ||||| |||| |||||| || |||||||||||||||||| |||||||||    
T  19637886 tatgatgcacaaatactcctcggattaggggcgt--cccggtgtcggatatgtatcgtgtccgacaccgacacatatgattacattgaataatgtcattt 19637789  T
Q  239 tgtcaaattatta 251  Q
    | | |||||||||    
T  19637788 tcttaaattatta 19637776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 30847731 - 30847771
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  30847731 catatgattacattgaattatgtcattttttcaaattatta 30847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 5898221 - 5898317
Alignment:
Q  153 actcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||||| ||  |||||||||||| || | || || ||||||||||| || ||||| |||||| |||||||||| ||||| ||| |||||||    
T  5898221 actcctcggattagacg--tgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaattatgtgattttttcagattatta 5898317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 40258888 - 40259004
Alignment:
Q  153 actcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattattac 252  Q
    |||||||||||||||||  ||||| |||||  || |||| || ||||||||||| || | | | |||||| |||||||||| ||||| |||||||||||     
T  40258888 actcctcggattaggcg--tgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtgattttttcaaattattaa 40258985  T
Q  253 tggtgtccgtgtctgtgct 271  Q
    | ||||| ||||| |||||    
T  40258986 ttgtgtcggtgtccgtgct 40259004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 6427408 - 6427358
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||| ||||| ||||||||||||||||| ||||| |||||||||||    
T  6427408 gacaccaacacatataattacattgaattatgtgattttctcaaattatta 6427358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 11412781 - 11412835
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattattactggtgtccgtgtctg 267  Q
    |||||| |||||||||||||||||||| ||| |||||||  ||||||||||||||    
T  11412781 tatgatcacattgaattatgtcattttctcatattattatcggtgtccgtgtctg 11412835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 3921712 - 3921675
Alignment:
Q  214 atgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||||||||||||||||| |||||||||||    
T  3921712 atgattacattgaattatgtcattttctcaaattatta 3921675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 17425104 - 17425157
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattattactggtgtccgtgt 264  Q
    ||||| ||||||||||||||||| ||||| |||||||||||  |||||||||||    
T  17425104 catataattacattgaattatgtgattttatcaaattattatcggtgtccgtgt 17425157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 40747790 - 40747842
Alignment:
Q  217 attacattgaattatgtcattttgtcaaattattactggtgtccgtgtctgtg 269  Q
    ||||||||||||||||||||||| |||||||||||   ||||| |||||||||    
T  40747790 attacattgaattatgtcattttctcaaattattatccgtgtcggtgtctgtg 40747842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 41017405 - 41017457
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcattttgtcaaattattact 253  Q
    |||||||||  |||| |||||||| |||||||||||||| |||||||||||||    
T  41017405 gacaccaacatatataattacattaaattatgtcattttctcaaattattact 41017457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 2445918 - 2445871
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattattactggtgt 258  Q
    |||||||||| |||||||||||||||||| ||||||||| | ||||||    
T  2445918 catatgattaaattgaattatgtcattttctcaaattatcattggtgt 2445871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 7988447 - 7988502
Alignment:
Q  196 tgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||| ||||||||| | ||||||||||||||||||||||| ||| | |||||||||    
T  7988447 tgtccgacaccaacacttatgattacattgaattatgtcactttcttaaattatta 7988502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 11571628 - 11571593
Alignment:
Q  216 gattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||||||||||||||| |||||||||||    
T  11571628 gattacattgaattatgtcattttctcaaattatta 11571593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 16812588 - 16812538
Alignment:
Q  214 atgattacattgaattatgtcattttgtcaaattattactggtgtccgtgt 264  Q
    |||||| || |||||||||| ||||||||||||||||| ||||||| ||||    
T  16812588 atgattccactgaattatgtgattttgtcaaattattattggtgtcggtgt 16812538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 29230107 - 29230065
Alignment:
Q  217 attacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    |||||||| |||||||||||||| |||||||||||| ||||||    
T  29230107 attacattcaattatgtcattttctcaaattattaccggtgtc 29230065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 17080896 - 17080945
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaattattactggtgtccgtgt 264  Q
    |||||||||| |||||||| ||||| ||||||||||| ||||||| ||||    
T  17080896 tgattacattcaattatgttattttctcaaattattattggtgtcggtgt 17080945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 38078602 - 38078712
Alignment:
Q  139 tatgaagcacaggtactcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattt 238  Q
    ||||||||||   ||||||||||||||||||  ||||| ||||||  | | || || |||| |||||| || | | | ||||||||||||||||| ||||    
T  38078602 tatgaagcacgaatactcctcggattaggcg--tgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaattatgtgattt 38078699  T
Q  239 tgtcaaattatta 251  Q
    | |||||||||||    
T  38078700 tttcaaattatta 38078712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 351095 - 351135
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||| ||||||||||||| ||||| |||||||||||    
T  351095 catatgattccattgaattatgtgattttatcaaattatta 351135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 14332452 - 14332420
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaatt 247  Q
    ||||||||||||||||||||||||| |||||||    
T  14332452 tgattacattgaattatgtcattttctcaaatt 14332420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 18946049 - 18946093
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    ||||||||||||||||||||||||| ||||| | | |||||||||    
T  18946049 tgattacattgaattatgtcattttctcaaaatttgactggtgtc 18946093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 42325616 - 42325568
Alignment:
Q  203 caccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||| |||||  ||||| |||||||||||||||| |||||||||||    
T  42325616 caccaacacatattgttacactgaattatgtcattttctcaaattatta 42325568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 43942368 - 43942324
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    ||||||||||||||||||| ||||| |||||| |||| |||||||    
T  43942368 tgattacattgaattatgttattttctcaaatcattattggtgtc 43942324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 21345474 - 21345591
Alignment:
Q  139 tatgaagcacaggtactcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattt 238  Q
    |||||||||||  |||||||||||||||||   ||| |||||||| |||| ||||| ||||||||||| ||  | ||||||||||||| |||||| ||||    
T  21345474 tatgaagcacacatactcctcggattaggca--tgtaccggtgttggatatgtatcgtgtctgacaccgacataaatgattacattgagttatgttattt 21345571  T
Q  239 tgtcaaattattactggtgt 258  Q
    | ||||||||||| ||||||    
T  21345572 tttcaaattattattggtgt 21345591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 34589645 - 34589753
Alignment:
Q  140 atgaagcacaggtactcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacac---caacccatatgattacattgaattatgtcat 236  Q
    |||||||||||||||||||||||||||  ||||| | |||||| ||||| ||||| |||| |||||   ||   || |||||||||||||||||||||||    
T  34589645 atgaagcacaggtactcctcggattag--gcgtgcctcggtgtcagatacgtatcgtgtccgacactgacacgacacatgattacattgaattatgtcat 34589742  T
Q  237 tttgtcaaatt 247  Q
    ||| |||||||    
T  34589743 tttctcaaatt 34589753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 56049964 - 56049885
Alignment:
Q  171 gtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||| |||||  |||| ||||||||||||||||| || ||||||||||||||||| ||||||| ||| |||||||||||    
T  56049964 gtgtcctggtgtcggatacgtatcatgtctgacaccgacacatatgattacattgaactatgtca-tttctcaaattatta 56049885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 18513252 - 18513306
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattattactggtgtccgtgtc 265  Q
    ||||||||||||||||||||||||||||| |||||||||||  |||||| |||||    
T  18513252 catatgattacattgaattatgtcattttctcaaattattatcggtgtctgtgtc 18513306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 24846747 - 24846829
Alignment:
Q  169 gcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||| ||| |||||||||| ||||||||||||| |||  | ||||||| |||| |||||||||||||||  |||||||||||    
T  24846747 gcgtgacccagtgttagatacgtatcatgtctgataccgtcacatatgagtacagtgaattatgtcatttgctcaaattatta 24846829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 14465305 - 14465357
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattattactggtgtccgtg 263  Q
    |||||||||| |||||||||||||||||| |||||||||||  ||||||||||    
T  14465305 catatgattaaattgaattatgtcattttctcaaattattatcggtgtccgtg 14465357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 33950199 - 33950144
Alignment:
Q  196 tgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||| || |||||||||||||| |||||||| ||||| |||||||||||    
T  33950199 tgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 5654604 - 5654642
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  5654604 tatgattacattgaattatgtcattttctcaaattatta 5654642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 10546194 - 10546156
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  10546194 tatgattacattgaattatgtcattttctcaaattatta 10546156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 19262939 - 19262989
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaattattactggtgtccgtgtc 265  Q
    |||||||||| ||||||||||| || ||||||||||||||||||| |||||    
T  19262939 tgattacattcaattatgtcatcttctcaaattattactggtgtcagtgtc 19262989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 27096015 - 27096052
Alignment:
Q  214 atgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  27096015 atgattacattcaattatgtcattttgtcaaattatta 27096052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 11110251 - 11110212
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatt 250  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  11110251 catatgattacatcgaattatgtcattttctcaaattatt 11110212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 43299983 - 43300022
Alignment:
Q  212 atatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  43299983 atatgattacattgaattatgtaattttctcaaattatta 43300022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 43300663 - 43300624
Alignment:
Q  212 atatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  43300663 atatgattacattgaattatgtaattttctcaaattatta 43300624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 51673438 - 51673493
Alignment:
Q  196 tgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||| |||| ||| |||||||| |||||||||||||||| || ||||||||    
T  51673438 tgtctgacaacaacgcatgtgattacaatgaattatgtcattttctccaattatta 51673493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 2976739 - 2976701
Alignment:
Q  214 atgattacattgaattatgtcattttgtcaaattattac 252  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  2976739 atgattacattcaattatgtcattttctcaaattattac 2976701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 7214522 - 7214580
Alignment:
Q  200 tgacaccaacccatatgattacattgaattatgtcattttgtcaaattattactggtgt 258  Q
    ||||||| || ||||| |||||||| |||||||| ||||| ||||||||||| ||||||    
T  7214522 tgacaccgacgcatataattacattaaattatgtgattttctcaaattattagtggtgt 7214580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 12310873 - 12310835
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcatttt 239  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  12310873 gacaccgacccatatgattacattgaattatgccatttt 12310835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 20743291 - 20743329
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  20743291 tatgattacactgaattatgtcattttctcaaattatta 20743329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 31243561 - 31243599
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  31243561 tatgattacactgaattatgtcattttctcaaattatta 31243599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 44362754 - 44362680
Alignment:
Q  171 gtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaa 245  Q
    |||||||| |||  |||| || || |||||||||||||| | | |||||||||| |||||||||||||| |||||    
T  44362754 gtgtcccgatgtccgatacgtgtcgtgtctgacaccaacacttgtgattacattaaattatgtcattttctcaaa 44362680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 8457969 - 8457932
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaattattac 252  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  8457969 tgattacattcaattatgtcattttctcaaattattac 8457932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 13307940 - 13307891
Alignment:
Q  196 tgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaa 245  Q
    |||| ||||||||| | | ||||||||||||||||||||||||| |||||    
T  13307940 tgtccgacaccaacacttgtgattacattgaattatgtcattttctcaaa 13307891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 40224439 - 40224537
Alignment:
Q  139 tatgaagcacaggtactcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattt 238  Q
    |||||||||||  ||||||||||||||| ||  ||||||  |||  || |  |||||||||  ||||| || |||||||||||||| |||||||||||||    
T  40224439 tatgaagcacacatactcctcggattagacg--tgtcccaatgtcggaaacatatcatgtccaacaccgacacatatgattacattaaattatgtcattt 40224536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 46180941 - 46180986
Alignment:
Q  205 ccaacccatatgattacattgaattatgtcattttgtcaaattatt 250  Q
    ||||| |||||||||||| |||||||||| ||||| ||||||||||    
T  46180941 ccaacacatatgattacactgaattatgttattttctcaaattatt 46180986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 50848319 - 50848368
Alignment:
Q  216 gattacattgaattatgtcattttgtcaaattattactggtgtccgtgtc 265  Q
    ||||||| |||||||| ||||||| ||||||||||| |||||| ||||||    
T  50848319 gattacactgaattatatcattttttcaaattattattggtgtacgtgtc 50848368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 26276026 - 26276058
Alignment:
Q  217 attacattgaattatgtcattttgtcaaattat 249  Q
    ||||||||||||||||||||||| |||||||||    
T  26276026 attacattgaattatgtcattttctcaaattat 26276058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 31552468 - 31552508
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||||| ||||||||||||| | |||||||||    
T  31552468 catatgattacattggattatgtcattttttgaaattatta 31552508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 36635381 - 36635325
Alignment:
Q  202 acaccaacccatatgattacattgaattatgtcattttgtcaaattattactggtgt 258  Q
    |||| ||| ||||| |||||| |||||||||| ||||| ||||||||||| ||||||    
T  36635381 acacgaacacatataattacactgaattatgtgattttctcaaattattagtggtgt 36635325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 20691382 - 20691327
Alignment:
Q  196 tgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||| || |||||||||||| |||||||||||||||| |||||||||||    
T  20691382 tgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattatta 20691327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 21478740 - 21478683
Alignment:
Q  202 acaccaacccatatgattacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    |||||||| |||||||||||||||| ||||||||| |||| ||||||||| |||||||    
T  21478740 acaccaacacatatgattacattgatttatgtcatcttgtgaaattattattggtgtc 21478683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 40150565 - 40150622
Alignment:
Q  194 catgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||| |||||| || ||||||||||||||||||||| ||||||| |||||||||||    
T  40150565 catgtcagacaccgacacatatgattacattgaattatatcattttctcaaattatta 40150622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 11093628 - 11093578
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||| ||| ||||||| ||||||||||||||||| |||||||||||    
T  11093628 gacaccaacacatctgattactttgaattatgtcattttttcaaattatta 11093578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 12704670 - 12704708
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  12704670 tatgattacattgaattatgtcattttttcaaattatta 12704708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 41319327 - 41319369
Alignment:
Q  217 attacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    ||||||||||||||||||||||| ||||||||||| |||||||    
T  41319327 attacattgaattatgtcattttttcaaattattattggtgtc 41319369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 20141178 - 20141107
Alignment:
Q  176 ccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaatta 248  Q
    ||||||| ||||| ||||| |||||||||| | | |||||||||||||| |||||||||| ||| ||||||||    
T  20141178 ccggtgtcagatatgtatcgtgtctgacacga-cacatatgattacattcaattatgtcagtttctcaaatta 20141107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 20503583 - 20503474
Alignment:
Q  139 tatgaagcacaggtactcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattt 238  Q
    |||||||||| |  |||||||||||||||||  ||||||||||| ||| | || || ||||  ||||| || | | | |||||| |||||||||||||||    
T  20503583 tatgaagcacggacactcctcggattaggcg--tgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtcattt 20503486  T
Q  239 tgtcaaattatt 250  Q
    | ||||||||||    
T  20503485 tttcaaattatt 20503474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 7928513 - 7928443
Alignment:
Q  196 tgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattattactggtgtccgtgtct 266  Q
    |||| |||||| || ||||| |||||| |||||||||| ||||| |||||||||||  |||||| ||||||    
T  7928513 tgtccgacaccgacacatataattacactgaattatgtgattttttcaaattattagcggtgtcggtgtct 7928443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 14338454 - 14338528
Alignment:
Q  171 gtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaa 245  Q
    ||||||||||||  |||| || || ||||||||||| ||   | ||||||||||||||||||||||||| |||||    
T  14338454 gtgtcccggtgtccgatacgtgtcgtgtctgacaccgacatttgtgattacattgaattatgtcattttttcaaa 14338528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 15983931 - 15983901
Alignment:
Q  235 attttgtcaaattattactggtgtccgtgtc 265  Q
    |||||||||||||||||||||||||||||||    
T  15983931 attttgtcaaattattactggtgtccgtgtc 15983901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 35223028 - 35222958
Alignment:
Q  169 gcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcatttt 239  Q
    ||||||||| |||| ||| | || ||||||| |||||| || ||||| ||||||||||||||||| |||||    
T  35223028 gcgtgtccccgtgtcagacacgtgtcatgtccgacaccgacacatataattacattgaattatgtgatttt 35222958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 52369821 - 52369783
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  52369821 tatgattacattgaattatgtaattttctcaaattatta 52369783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 9210840 - 9210876
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  9210840 tgattccattgaattatgtcattttctcaaattatta 9210876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 9624689 - 9624649
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    
T  9624689 catataattacattgaattatgtgattttctcaaattatta 9624649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 10955057 - 10954960
Alignment:
Q  152 tactcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||||||||  |||||| ||||  || | || || |||| |||||| || | | |||||||| |||||||||| ||||| |||||||||||    
T  10955057 tactcctcggattaggcg--tgtcccagtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaattatgtgattttttcaaattatta 10954960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 21149111 - 21149075
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||| |||||||||||||||| |||||||||||    
T  21149111 tgattacactgaattatgtcattttctcaaattatta 21149075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 23271978 - 23272042
Alignment:
Q  184 agataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaatta 248  Q
    ||||| ||||| ||||  ||||| || |||||||||||||| |||||||||| ||| ||||||||    
T  23271978 agatacgtatcgtgtccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 40017386 - 40017426
Alignment:
Q  217 attacattgaattatgtcattttgtcaaattattactggtg 257  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  40017386 attacattgaattatgtcattttctcaaattgttattggtg 40017426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 47678897 - 47678861
Alignment:
Q  203 caccaacccatatgattacattgaattatgtcatttt 239  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  47678897 caccaacacatatgattacattcaattatgtcatttt 47678861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 18646235 - 18646173
Alignment:
Q  196 tgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattattactggtgt 258  Q
    |||| |||||||||  ||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  18646235 tgtccgacaccaacatatatgattacactgaatcatgtcattttttcaaattattactggtgt 18646173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 29198490 - 29198531
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattattac 252  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  29198490 catatgattacattgaattatgtcattttctcaaattattac 29198531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 3508108 - 3508060
Alignment:
Q  203 caccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||||||    
T  3508108 caccaacacatatgattacattgaattatgttattttctcaaattatta 3508060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 40063997 - 40063945
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattattactggtgtccgtgtc 265  Q
    |||||||||| |||||||||||||||| ||||||||||| ||||||| |||||    
T  40063997 tatgattacaatgaattatgtcattttctcaaattattattggtgtcggtgtc 40063945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 37225754 - 37225801
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattattactggtgt 258  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  37225754 catatgattacattgaattatgttattttctcaaattattattggtgt 37225801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 34201057 - 34201097
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  34201057 catataattacattgaattatgtcattttctcaaattatta 34201097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 12559106 - 12559157
Alignment:
Q  200 tgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||  |||||||||||| |||||||| ||||||| |||||||||||    
T  12559106 tgacaccaatacatatgattacactgaattatatcattttctcaaattatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 12606825 - 12606880
Alignment:
Q  196 tgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||| || ||||| ||||||||||||||| | ||||| |||||||||||    
T  12606825 tgtctgacaccgacacatataattacattgaattatatgattttctcaaattatta 12606880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 12985439 - 12985400
Alignment:
Q  212 atatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  12985439 atatgattacattgaattatgtgattttctcaaattatta 12985400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 31548293 - 31548344
Alignment:
Q  200 tgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||| || ||| ||||||||||||||||||||||||| |||||| ||||    
T  31548293 tgacaccgacacatgtgattacattgaattatgtcattttatcaaataatta 31548344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 44462151 - 44462234
Alignment:
Q  154 ctcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcatttt 239  Q
    ||||||||||||| ||  |||||||||||  || | ||||| ||||||||||| || |||||||||| |||||||| |||| ||||    
T  44462151 ctcctcggattagacg--tgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgtgtcttttt 44462234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 44469684 - 44469767
Alignment:
Q  154 ctcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcatttt 239  Q
    ||||||||||||| ||  |||||||||||  || | ||||| ||||||||||| || |||||||||| |||||||| |||| ||||    
T  44469684 ctcctcggattagacg--tgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgtgtcttttt 44469767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 33382019 - 33382088
Alignment:
Q  200 tgacaccaacccatatgattacattgaattatgtcattttgtcaaattattactggtgtccgtgtctgtg 269  Q
    ||||||| || ||||| |||||  |||||||||||||||| | |||||||||  ||||| ||||||||||    
T  33382019 tgacaccgacacatataattactctgaattatgtcattttcttaaattattatcggtgttcgtgtctgtg 33382088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 1591340 - 1591300
Alignment:
Q  218 ttacattgaattatgtcattttgtcaaattattactggtgt 258  Q
    |||||||||||||||||||||| ||||| ||||||| ||||    
T  1591340 ttacattgaattatgtcattttctcaaaatattactagtgt 1591300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 6211456 - 6211488
Alignment:
Q  219 tacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||||||||||| |||||||||||    
T  6211456 tacattgaattatgtcattttttcaaattatta 6211488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 10441245 - 10441213
Alignment:
Q  217 attacattgaattatgtcattttgtcaaattat 249  Q
    ||||||||||||||||||||||| |||||||||    
T  10441245 attacattgaattatgtcattttctcaaattat 10441213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 14227263 - 14227223
Alignment:
Q  218 ttacattgaattatgtcattttgtcaaattattactggtgt 258  Q
    |||||||||||||||| ||||| ||||||||||| ||||||    
T  14227263 ttacattgaattatgttattttctcaaattattattggtgt 14227223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 22771010 - 22770970
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||||||||||||||  |||| |||||||||||    
T  22771010 catatgattacattgaattatgttgttttatcaaattatta 22770970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 31236588 - 31236628
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    
T  31236588 catataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 28296386 - 28296336
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||| ||||||| ||||||||||||||||||||| |||||||||||    
T  28296386 gacaccaacacatatgagtacattgaattatgtcattttctcaaattatta 28296336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 38749565 - 38749614
Alignment:
Q  202 acaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||||||    
T  38749565 acaccaacacatataattacattgaattatgtcattttttcaaattatta 38749614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 11596399 - 11596506
Alignment:
Q  139 tatgaagcacaggtactcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattt 238  Q
    |||||||||||  |||||||||||||||||| ||   || |||| |||||  |||| ||||  ||||| || |||  |||||||||||||||||||||||    
T  11596399 tatgaagcacaaatactcctcggattaggcgtgt---ccagtgtcagatacatatcgtgtccaacaccgacgcat--gattacattgaattatgtcattt 11596493  T
Q  239 tgtcaaattatta 251  Q
    | |||||||||||    
T  11596494 tctcaaattatta 11596506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 28588643 - 28588733
Alignment:
Q  169 gcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    |||||||| ||||| ||||| || || |||| |||||| || | ||| |||||| |||||||||| ||||| |||||||||||| ||||||    
T  28588643 gcgtgtcctggtgtcagatatgtgtcgtgtccgacaccgacacctataattacactgaattatgtgattttctcaaattattaccggtgtc 28588733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 31264484 - 31264438
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    |||||||||| |||||||||||||||| ||||||||||||| |||||    
T  31264484 tatgattacactgaattatgtcattttctcaaattattacttgtgtc 31264438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 38806859 - 38806913
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattattactggtgtccgtgtc 265  Q
    |||||| ||||||||||| ||||||| || ||||||||||| |||||||||||||    
T  38806859 catatgcttacattgaatcatgtcatattctcaaattattattggtgtccgtgtc 38806913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 2039863 - 2039908
Alignment:
Q  214 atgattacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    ||||||||||||||| |||||||||| |||||||||||| ||||||    
T  2039863 atgattacattgaatcatgtcattttctcaaattattaccggtgtc 2039908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 18145287 - 18145336
Alignment:
Q  184 agataggtatcatgtctgacaccaacccatatgattacattgaattatgt 233  Q
    ||||| ||||| ||| |||||||||| |||||||||||||||||||||||    
T  18145287 agataagtatcgtgtttgacaccaacacatatgattacattgaattatgt 18145336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 16199300 - 16199336
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||| ||||||||||||||||||||||||||||||    
T  16199300 tgattaaattgaattatgtcattttgtcaaattatta 16199336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 16881184 - 16881144
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  16881184 catatgattacattaaattatgtcattttttcaaattatta 16881144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 43208286 - 43208322
Alignment:
Q  212 atatgattacattgaattatgtcattttgtcaaatta 248  Q
    |||||||||||||||||||||||||||| ||||||||    
T  43208286 atatgattacattgaattatgtcattttctcaaatta 43208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 18607110 - 18607148
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  18607110 tatgattacattgaattatgttattttctcaaattatta 18607148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 4344787 - 4344750
Alignment:
Q  214 atgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  4344787 atgattacactgaattatgtcattttttcaaattatta 4344750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 9449510 - 9449469
Alignment:
Q  218 ttacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    |||||||||||||||| ||||| ||||||||||| |||||||    
T  9449510 ttacattgaattatgtgattttctcaaattattattggtgtc 9449469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 19737484 - 19737533
Alignment:
Q  202 acaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||| || ||||||||| ||||||||||||| ||||| |||||||||||    
T  19737484 acaccgacacatatgattgcattgaattatgtaattttctcaaattatta 19737533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 32444824 - 32444767
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcattttgtcaaattattactggtgt 258  Q
    |||||| || ||| |||||||||||||||||||||| || ||||||| ||| ||||||    
T  32444824 gacaccgacacatttgattacattgaattatgtcatcttctcaaattgttaatggtgt 32444767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 2577191 - 2577231
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||| | |||||||||||||| |||||||||||    
T  2577191 catatgattacactaaattatgtcattttctcaaattatta 2577231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 39424681 - 39424641
Alignment:
Q  219 tacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    |||||||||| |||||||||| ||||||||||| |||||||    
T  39424681 tacattgaatcatgtcattttctcaaattattattggtgtc 39424641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 18571062 - 18570980
Alignment:
Q  169 gcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||| |||||  |||| ||||| |||  |||||  || ||||||||||||||||||||||||||||| |||||||||||    
T  18571062 gcgtgtcctggtgtcggatatgtatcgtgttcgacactgacacatatgattacattgaattatgtcattttctcaaattatta 18570980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 28121551 - 28121607
Alignment:
Q  202 acaccaacccatatgattacattgaattatgtcattttgtcaaattattactggtgt 258  Q
    |||||||| ||||| |||||||||| ||||| |||||| ||||||||||| ||||||    
T  28121551 acaccaacacatataattacattgatttatgccattttctcaaattattaatggtgt 28121607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 31026742 - 31026703
Alignment:
Q  212 atatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  31026742 atatgattacattgaattatgtcattttcttaaattatta 31026703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 40682024 - 40681981
Alignment:
Q  217 attacattgaattatgtcattttgtcaaattattactggtgtcc 260  Q
    ||||||||||||||||||||||| |||||||||||  |||||||    
T  40682024 attacattgaattatgtcattttctcaaattattatcggtgtcc 40681981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 10535772 - 10535810
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  10535772 tatgattacactgaattatgtcattttctcaaattatta 10535810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 45000847 - 45000893
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcattttgtcaaatt 247  Q
    |||||| || ||||||||||||||||||| ||||||||| |||||||    
T  45000847 gacaccgacacatatgattacattgaattgtgtcattttctcaaatt 45000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 26787813 - 26787858
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaattattactggtgtcc 260  Q
    ||||||||| ||||||||||||||| ||||||| ||| ||||||||    
T  26787813 tgattacatcgaattatgtcattttctcaaatttttattggtgtcc 26787858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 30563450 - 30563417
Alignment:
Q  218 ttacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||||||||||||| |||||||||||    
T  30563450 ttacattgaattatgtcattttctcaaattatta 30563417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 2846920 - 2846960
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||||||||||||||||| | || ||||||||    
T  2846920 catatgattacattgaattatgtcattgtctccaattatta 2846960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 4229419 - 4229467
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    |||||||||||| |||||||||||||| | | ||||||||| |||||||    
T  4229419 catatgattacactgaattatgtcattctcttaaattattattggtgtc 4229467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 11308017 - 11308053
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattat 249  Q
    |||||||||| |||||||||||||||| |||||||||    
T  11308017 tatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 19613624 - 19613664
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    
T  19613624 catatcattacattgaattatgttattttctcaaattatta 19613664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 37402095 - 37402123
Alignment:
Q  211 catatgattacattgaattatgtcatttt 239  Q
    |||||||||||||||||||||||||||||    
T  37402095 catatgattacattgaattatgtcatttt 37402123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 33419236 - 33419176
Alignment:
Q  196 tgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattattactggt 256  Q
    |||||||||||||| ||||| ||||||||||||||| ||| ||| ||||||||||| ||||    
T  33419236 tgtctgacaccaacacatataattacattgaattatatcaatttttcaaattattagtggt 33419176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 9024187 - 9024225
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattat 249  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  9024187 catatgattacattgaattatgtcattttctcaaattat 9024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 33340943 - 33340997
Alignment:
Q  198 tctgacaccaacccatatgattacattgaattatgtcattttgtcaaattattac 252  Q
    |||||||||||| ||||||||| |||||| |||||| ||||| ||||||||||||    
T  33340943 tctgacaccaacacatatgattccattgagttatgtgattttctcaaattattac 33340997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 35125155 - 35125101
Alignment:
Q  198 tctgacaccaacccatatgattacattgaattatgtcattttgtcaaattattac 252  Q
    |||||||||||| ||||||||| |||||| |||||| ||||| ||||||||||||    
T  35125155 tctgacaccaacacatatgattccattgagttatgtgattttctcaaattattac 35125101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 2493428 - 2493465
Alignment:
Q  214 atgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  2493428 atgattacattcaattatgtcattttgtcaaattatta 2493465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 18612682 - 18612641
Alignment:
Q  198 tctgacaccaacccatatgattacattgaattatgtcatttt 239  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  18612682 tctgacaccaacacatatgattacattgaattatgacatttt 18612641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 4859128 - 4859172
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaattattactggtgtc 259  Q
    ||||||||||| ||||||||||||| ||||||||||| |||||||    
T  4859128 tgattacattggattatgtcattttctcaaattattattggtgtc 4859172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 4864144 - 4864073
Alignment:
Q  178 ggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattat 249  Q
    ||||| ||||| ||||  |||| ||||||||| ||||| |||| ||| |||||||||||||| |||||||||    
T  4864144 ggtgtcagatatgtattgtgtccgacaccaacacatataattaaattaaattatgtcattttttcaaattat 4864073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 9617492 - 9617441
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcattttgtcaaattattac 252  Q
    |||||| || ||||| ||||||||||||||||| ||||| ||||||||||||    
T  9617492 gacaccgacacatataattacattgaattatgtgattttctcaaattattac 9617441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 17168952 - 17168902
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||| ||| |||||  |||||||||||||||||||||| |||||||||||    
T  17168952 gacacaaacacatatagttacattgaattatgtcattttttcaaattatta 17168902  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 34446611 - 34446573
Alignment:
Q  213 tatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  34446611 tatgattacactgaattatgtcattttctcaaattatta 34446573  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 2140499 - 2140532
Alignment:
Q  218 ttacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||||||||||||| |||||||||||    
T  2140499 ttacattgaattatgtcattttctcaaattatta 2140532  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 9629441 - 9629392
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcattttgtcaaattatt 250  Q
    |||||| || ||||| ||||||||||||||||| ||||| ||||||||||    
T  9629441 gacaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 10158028 - 10157995
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaatta 248  Q
    ||||||||||||||||||||||||| ||||||||    
T  10158028 tgattacattgaattatgtcattttctcaaatta 10157995  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 29049930 - 29049893
Alignment:
Q  214 atgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  29049930 atgattacattgaattatgtaattttctcaaattatta 29049893  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 29670959 - 29670903
Alignment:
Q  192 atcatgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattat 249  Q
    ||||||||| |||||||| ||| || ||||||||||| |||||||||| |||||||||    
T  29670959 atcatgtct-acaccaacacatgtggttacattgaatcatgtcattttctcaaattat 29670903  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 31563810 - 31563859
Alignment:
Q  211 catatgattacattgaattatgtca-ttttgtcaaattattactggtgtc 259  Q
    |||||||||||||||||||| |||| |||| |||||||||||||| ||||    
T  31563810 catatgattacattgaattacgtcatttttttcaaattattactgatgtc 31563859  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 34595252 - 34595142
Alignment:
Q  139 tatgaagcacaggtactcctcggattaggcgcgtgtcccggtgttagataggtatcatgtctgacaccaacccatatgattacattgaattatgtcattt 238  Q
    |||||||||| |  ||||||||||||||| |  ||||||||||| ||| | || || |||| |||||| || | | | |||||| |||||||||| ||||    
T  34595252 tatgaagcacggacactcctcggattaggtg--tgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattt 34595155  T
Q  239 tgtcaaattatta 251  Q
    | |||||||||||    
T  34595154 tttcaaattatta 34595142  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 13360368 - 13360443
Alignment:
Q  196 tgtctgacaccaacccatatgattacattgaattatgtcattttgtcaaattattactggtgtc--cgtgtctgtg 269  Q
    ||||||||||| |  ||||| |||||| |||||||||| ||||| |||||||| || |||||||  ||||||||||    
T  13360368 tgtctgacaccgaaacatataattacactgaattatgtgattttctcaaattactagtggtgtcgacgtgtctgtg 13360443  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 30866155 - 30866195
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    
T  30866155 catataattacattgaattatgtgattttctcaaattatta 30866195  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 34541761 - 34541801
Alignment:
Q  211 catatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||||||||||||| ||||||||| || ||||||||    
T  34541761 catatgattacattgaattttgtcattttttctaattatta 34541801  T

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Target: scaffold0376 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 6370 - 6306
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcattttgtcaaattattactggtgtccgtgtc 265  Q
    |||||| || ||||| ||||||||||||||||  |||||||||||||||||   |||||||||||    
T  6370 gacaccgacacatataattacattgaattatgcaattttgtcaaattattagcagtgtccgtgtc 6306  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 240021 - 240072
Alignment:
Q  200 tgacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||| || ||||||||||||||||||||| | ||||| |||||||||||    
T  240021 tgacaccgacacatatgattacattgaattatattattttctcaaattatta 240072  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 99951 - 99901
Alignment:
Q  201 gacaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||||||| ||||| ||||||||||||||||| ||||| | |||||||||    
T  99951 gacaccaacacatataattacattgaattatgttattttctaaaattatta 99901  T

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Target: scaffold0320 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 17038 - 17087
Alignment:
Q  202 acaccaacccatatgattacattgaattatgtcattttgtcaaattatta 251  Q
    |||||||| ||||| |||||||||| ||||| |||||| |||||||||||    
T  17038 acaccaacacatataattacattgatttatgccattttctcaaattatta 17087  T

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Target: scaffold0571 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 7734 - 7698
Alignment:
Q  215 tgattacattgaattatgtcattttgtcaaattatta 251  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  7734 tgattgcattgaattatgtcattttctcaaattatta 7698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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