View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21364_low_2 (Length: 545)

Name: NF21364_low_2
Description: NF21364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21364_low_2
NF21364_low_2
[»] chr1 (2 HSPs)
chr1 (19-460)||(40725751-40726191)
chr1 (382-448)||(48682011-48682075)
[»] chr3 (2 HSPs)
chr3 (378-460)||(39922463-39922543)
chr3 (382-444)||(28433627-28433688)
[»] chr4 (2 HSPs)
chr4 (382-448)||(16598589-16598655)
chr4 (393-444)||(13719302-13719354)
[»] chr5 (1 HSPs)
chr5 (398-459)||(5589184-5589245)
[»] chr2 (1 HSPs)
chr2 (410-458)||(33085637-33085685)


Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Complemental strand, 40726191 - 40725751
Alignment:
Q  19 acagtcacacacaacttgttcgtactgctactgcagcaggctttttgagtttcttttcagttcgaatttaccgttcagtaattgatgatttgagttgttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40726191 acagtcacacacaacttgttcgtactgctactgcagcaggctttttgagtttcttttcagttcgaatttaccgttcagtaattgatgatttgagttgttc 40726092  T
Q  119 gaggatctatgaccaatccattcattgttatttgttattattatctaaccttacacgtggttccattcacctacaagcacttatagtgccgtgcgcactc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40726091 gaggatctatgaccaatccattcattgttatttgttattattatctaaccttacacgtggttccattcacctacaagcacttatagtgccgtgcgcactc 40725992  T
Q  219 tatctaggtttcaactttttctcccgccaattttgcctctgctaatgtgcatccttccttctacacctacttcgtagatttgtgtactttcttttttcct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40725991 tatctaggtttcaactttttctcccgccaattttgcctctgctaatgtgcatccttccttctacacctacttcgtagatttgtgtactttcttttttcct 40725892  T
Q  319 agtctaatactccattttattttactacaaagagtaacatatat----------tcacaaacccaaaatatattatttgggcatacatgcaaaaccataa 408  Q
    |||||||||||||||||||||||||||||||||| |||||||||          || |||||||||||||||||||||||||||||||||||||||        
T  40725891 agtctaatactccattttattttactacaaagagcaacatatatacttgcttggtctcaaacccaaaatatattatttgggcatacatgcaaaacc---- 40725796  T
Q  409 gaaaaataaaagaaaatacaattgaataatgtcaattgatgtggttaaataa 460  Q
           ||||||||||||||||||||||| |||||||||||| ||||||||    
T  40725795 -------aaaagaaaatacaattgaataatatcaattgatgtgattaaataa 40725751  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 448
Target Start/End: Original strand, 48682011 - 48682075
Alignment:
Q  382 tatttgggcatacatgcaaaaccataagaaaaataaaagaaaatacaattgaataatgtcaattgat 448  Q
    ||||| ||||||||  ||||| |||||  |||||||||||||||| ||||||||||||||| |||||    
T  48682011 tatttaggcatacacacaaaatcataa--aaaataaaagaaaataaaattgaataatgtcagttgat 48682075  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 460
Target Start/End: Complemental strand, 39922543 - 39922463
Alignment:
Q  378 atattatttgggcatacatgcaaaaccataagaaaaataaaagaaaatacaattgaataatgtcaattgatgtggttaaataa 460  Q
    ||||||||||  ||||||  |||||| | ||||||||||||||| |||||||||||||||| ||||| ||||||  |||||||    
T  39922543 atattatttgatcataca--caaaactaaaagaaaaataaaagagaatacaattgaataatatcaatcgatgtgactaaataa 39922463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 444
Target Start/End: Original strand, 28433627 - 28433688
Alignment:
Q  382 tatttgggcatacatgcaaaaccataagaaaaataaaagaaaatacaattgaataatgtcaat 444  Q
    ||||||||||| ||  ||||||||||| ||||||| |||| |||| |||||||||||||||||    
T  28433627 tatttgggcatgcacacaaaaccataa-aaaaatataagagaataaaattgaataatgtcaat 28433688  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 448
Target Start/End: Complemental strand, 16598655 - 16598589
Alignment:
Q  382 tatttgggcatacatgcaaaaccataagaaaaataaaagaaaatacaattgaataatgtcaattgat 448  Q
    |||||||||||||   |||||| | |||||||||| |||| || | |||||||||||||||||||||    
T  16598655 tatttgggcatactcacaaaactaaaagaaaaatataagagaacaaaattgaataatgtcaattgat 16598589  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 13719354 - 13719302
Alignment:
Q  393 acatgcaaaaccataagaaaaa-taaaagaaaatacaattgaataatgtcaat 444  Q
    |||| |||||||| |||||||| ||||||| || |||||||||||||||||||    
T  13719354 acatacaaaaccaaaagaaaaaataaaagagaacacaattgaataatgtcaat 13719302  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 459
Target Start/End: Original strand, 5589184 - 5589245
Alignment:
Q  398 caaaaccataagaaaaataaaagaaaatacaattgaataatgtcaattgatgtggttaaata 459  Q
    ||||| || ||||||||||||||| || | ||||||||||||||| ||||| || |||||||    
T  5589184 caaaatcaaaagaaaaataaaagagaacaaaattgaataatgtcatttgatttgattaaata 5589245  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 458
Target Start/End: Complemental strand, 33085685 - 33085637
Alignment:
Q  410 aaaaataaaagaaaatacaattgaataatgtcaattgatgtggttaaat 458  Q
    |||| ||||||| |||| ||||||||||| |||||||||||| ||||||    
T  33085685 aaaattaaaagagaataaaattgaataatctcaattgatgtgattaaat 33085637  T

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