View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21364_low_20 (Length: 245)
Name: NF21364_low_20
Description: NF21364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21364_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 40422071 - 40421845
Alignment:
| Q |
19 |
acgaagaaccatccctcaacgtacgccaagacatattagttgaagaagtaccaaagctaggcgaaaaagcagcattaaaagccataaaagaatggggaag |
118 |
Q |
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| T |
40422071 |
acgaagaaccatccctcaacgtacgccaagacatattagttgaagaagtaccaaagctaggcgaaaaagcagcattaaaagccataaaagaatggggaag |
40421972 |
T |
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| Q |
119 |
accaaaatcagagataacccatctcatattttgttcaacttctggtgttgacatgcctggtgctgattatcaactcatcaaactcttgaatctaaatcca |
218 |
Q |
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| T |
40421971 |
accaaaatcagagataacccatctcatattttgttcaacttctggtgttgacatgcctggtgctgattatcaactcatcaaactcttgaatctaaatcca |
40421872 |
T |
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| Q |
219 |
tccactaaaaggttcatgttataccac |
245 |
Q |
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| T |
40421871 |
tccactaaaaggttcatgttataccac |
40421845 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 5284419 - 5284464
Alignment:
| Q |
161 |
tggtgttgacatgcctggtgctgattatcaactcatcaaactcttg |
206 |
Q |
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| T |
5284419 |
tggtgtagacatgcctggagccgattatcaactcaccaaactcttg |
5284464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 5310508 - 5310553
Alignment:
| Q |
161 |
tggtgttgacatgcctggtgctgattatcaactcatcaaactcttg |
206 |
Q |
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| T |
5310508 |
tggtgtagacatgcctggagctgattatcaactcacaaaactcttg |
5310553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 5315222 - 5315263
Alignment:
| Q |
161 |
tggtgttgacatgcctggtgctgattatcaactcatcaaact |
202 |
Q |
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| T |
5315222 |
tggtgttgacatgcctggagcagattatcaactcaccaaact |
5315263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 1478110 - 1478154
Alignment:
| Q |
161 |
tggtgttgacatgcctggtgctgattatcaactcatcaaactctt |
205 |
Q |
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| T |
1478110 |
tggtgtagacatgcctggcgctgattaccaactcaccaaactctt |
1478154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 1505088 - 1505132
Alignment:
| Q |
161 |
tggtgttgacatgcctggtgctgattatcaactcatcaaactctt |
205 |
Q |
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| T |
1505088 |
tggtgtagacatgcctggagctgattaccaactcaccaaactctt |
1505132 |
T |
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