View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21364_low_22 (Length: 238)
Name: NF21364_low_22
Description: NF21364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21364_low_22 |
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| [»] scaffold0339 (2 HSPs) |
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Alignment Details
Target: scaffold0339 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 15712 - 15909
Alignment:
| Q |
23 |
actcttatcataagtcttatctatttgatgcggtacttgggtttttcccgataattttgattgcaatgtgactaatttttatttaccataaggaattgaa |
122 |
Q |
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|||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15712 |
actcttatcaaaaatcttatctatttgatgtggtacttgggtttttcccgataattttgattgcaaggtgactaatttttatttaccataaggaattgaa |
15811 |
T |
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| Q |
123 |
tacatccttatatatcaaaataaagttgtttactcgctgcatcttaaaggcactagtagtttgctcaagttccttcatgaaaaaactcaaaacaccag |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15812 |
tacatccttatatatcaaaataaagttgtttactcgctgcatcttaaaggcactagtagtttgctcaagttccttcatgaaaaaactcaaaacaccag |
15909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 2994 - 2956
Alignment:
| Q |
181 |
gtttgctcaagttccttcatgaaaaaactcaaaacaccag |
220 |
Q |
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| T |
2994 |
gtttgctcaagttccttcatga-aaaactcaaaacaccag |
2956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 8044606 - 8044654
Alignment:
| Q |
23 |
actcttatcataagtcttatctatttgatgcggtacttgggtttttccc |
71 |
Q |
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| T |
8044606 |
actcttatcaagagtcttatctatctgatgcgggacttgggtttttccc |
8044654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 47273769 - 47273731
Alignment:
| Q |
181 |
gtttgctcaagttccttcatgaaaaaactcaaaacaccag |
220 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |
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| T |
47273769 |
gtttgctcaagttccttcatga-aaaactcaaaacaccag |
47273731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 36878370 - 36878312
Alignment:
| Q |
23 |
actcttatcataagtcttatctatttgatgcggtacttgggtttttcccgataattttg |
81 |
Q |
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|||||||||| ||||||||||||| ||||| || |||| |||||||||| ||| ||||| |
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| T |
36878370 |
actcttatcaaaagtcttatctatctgatgtgggactttggtttttcccaatagttttg |
36878312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 13413616 - 13413575
Alignment:
| Q |
35 |
agtcttatctatttgatgcggtacttgggtttttcccgataa |
76 |
Q |
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|||||||||||||||||| || ||||||||||||||| |||| |
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| T |
13413616 |
agtcttatctatttgatgtgggacttgggtttttcccaataa |
13413575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 10668404 - 10668356
Alignment:
| Q |
23 |
actcttatcataagtcttatctatttgatgcggtacttgggtttttccc |
71 |
Q |
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|||||||||| ||| |||||||||||||| || ||||||||||||||| |
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|
| T |
10668404 |
actcttatcaagagttttatctatttgatgtgggacttgggtttttccc |
10668356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 12941614 - 12941561
Alignment:
| Q |
23 |
actcttatcataagtcttatctatttgatgcggtacttgggtttttcccgataa |
76 |
Q |
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||||| ||||| ||||| |||||| ||||| |||||||||||||||||| |||| |
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| T |
12941614 |
actctcatcatgagtctcatctatctgatgtggtacttgggtttttcccaataa |
12941561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 30539464 - 30539416
Alignment:
| Q |
23 |
actcttatcataagtcttatctatttgatgcggtacttgggtttttccc |
71 |
Q |
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|||||||||| ||||||||||||| |||| || ||||||||||||||| |
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| T |
30539464 |
actcttatcaaaagtcttatctatccgatgtgggacttgggtttttccc |
30539416 |
T |
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