View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21364_low_9 (Length: 341)
Name: NF21364_low_9
Description: NF21364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21364_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 71242 - 70935
Alignment:
| Q |
20 |
gctctggccttattggctgtgcgtacagcagatgatgcaaggctttccaatggactcataggcaatggagtagaccttatcatctctttgaagatagcac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
71242 |
gctctggccttattggctgtgcgtacagcagatgatgcaaggctttccaatggactcataggcaatggagtagaccttatcatctctttgaagatagcac |
71143 |
T |
|
| Q |
120 |
catagtcaagggatgattcagcttcgatacaaatgcgggccatgattttcacagcaagttcagggtaagctccagcagcactttcaccactaagcatgac |
219 |
Q |
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| T |
71142 |
catagtcaagggatgattcagcttcaatacaaatgcgggccatgattttcacagcaagttcagggtaagctccagcagcactttcaccactaagcatgac |
71043 |
T |
|
| Q |
220 |
gcaatccgttccatcaagaactgcattggctacatcagttgcttcagctcgggttggccggggagatttgatcatggattcaagcatctgagtagcagtc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
71042 |
gcaatccgttccatcaagaactgcattggctacatcagttgcttcagctcgggttggccggggagatttgatcatggattcaagcatctgagtagcagtc |
70943 |
T |
|
| Q |
320 |
accacagg |
327 |
Q |
| |
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|||||||| |
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| T |
70942 |
accacagg |
70935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 32419312 - 32419436
Alignment:
| Q |
170 |
acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctc |
269 |
Q |
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| T |
32419312 |
acagcgagttctggataagctccagcagcagtttcaccactaagcatgacacagtctgttccatccagaactgcatttgcaacatcagtagcttcagctc |
32419411 |
T |
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| Q |
270 |
gggttggccggggagatttgatcat |
294 |
Q |
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|||||||||||||||||||||||| |
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| T |
32419412 |
tggttggccggggagatttgatcat |
32419436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 32425590 - 32425714
Alignment:
| Q |
170 |
acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctc |
269 |
Q |
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||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||| |
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| T |
32425590 |
acagcaagttctggataagctccagcagcagtttcaccactaagcatgacacaatctgtgccatccagaactgcattcgcgacatcagtagcttcagctc |
32425689 |
T |
|
| Q |
270 |
gggttggccggggagatttgatcat |
294 |
Q |
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|||||||| || ||||||||||| |
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| T |
32425690 |
tggttggcctaggtgatttgatcat |
32425714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 170 - 327
Target Start/End: Original strand, 40596296 - 40596453
Alignment:
| Q |
170 |
acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctc |
269 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||||||| ||||||||||| || || || || || |||||||||||||| ||||| || |||||||||| |
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| T |
40596296 |
acagcaagttctggataagctccagcagcagtttcaccgctaagcatgacacagtctgtgccgtccagaactgcattggcgacatctgtagcttcagctc |
40596395 |
T |
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| Q |
270 |
gggttggccggggagatttgatcatggattcaagcatctgagtagcagtcaccacagg |
327 |
Q |
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|||||||| ||||||||||||||| || || | |||||| || ||||| || ||||| |
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|
| T |
40596396 |
tggttggcctgggagatttgatcattgactccaacatctgggttgcagtaacaacagg |
40596453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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