View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21365_low_1 (Length: 647)
Name: NF21365_low_1
Description: NF21365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21365_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 577; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 7 - 628
Target Start/End: Original strand, 10032358 - 10032979
Alignment:
| Q |
7 |
agagaagaatggaagaaccttgctatgcagcaaacatcgcttctgaaaaatatgactcttccctatctcacgtgagtttcttcttgttgctattaacacc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10032358 |
agagaagaatggaagaaccttgctatgcagcaaacatcgcttttgaaaaatatgactcttccctatctcacgtgagtgtcttcttgttgctattaacacc |
10032457 |
T |
|
| Q |
107 |
atttcaattttgcaattcttgtcaaccagggatggaagtcttgctattatatattagaatgtgcataccatgctttaaaaatgtggtcgcaattgcagct |
206 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10032458 |
atttcaattttgcatttcttgtcaaccacggatggaagtcttgctattatatattagaatgtgcataccatgctttaaaaatgtggtcgcatttgcagct |
10032557 |
T |
|
| Q |
207 |
gtggttattccgcaaaccttttctttcttttagcggcatgcccttatgtatatgcctctttctatttgtcnnnnnnnctatcaactcaccaaagagcact |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
10032558 |
gtggttattccgcaaaccttttctttcttttagcggcatgcccttatgtatatgcctctttctatttgtcaaaaaaactaccaactcaccaaagagcact |
10032657 |
T |
|
| Q |
307 |
ttaatgagatgatttgaatctcttcctgcttaactagaagtcttgggtttgaattcatacctgagaatatagtcgcgttaaaactattgaggatattgga |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10032658 |
ttaatgagatgatttgaatctcttcctgcttaactagaagtcttgggtttgaattcatacctgagaatatagtcgcgttaaaactattgaggatattgga |
10032757 |
T |
|
| Q |
407 |
ttatgtagttaatatacaagcctaaatcctaatcaatgactttgattttttcatagttagcatcttgagtatatctatattttgtttctcaagaaattgg |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10032758 |
ttatgtagttaatatacaagcctaaatcctaatcaatgactttgattttttcatagttagcatcttgagtatatctatattttgtttctcaagaaattgg |
10032857 |
T |
|
| Q |
507 |
aagcatgtttctcaatcctaatctatttttggtgaaatggatgtttaattaaacatcgattagcattttgttaccaagctttacaatctaacatctctca |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10032858 |
aagcatgtttctcaatcctaatctatttttggtgaaatggatgtttaattaaacatcgattagcattttgttaccaagctttacaatctaacatctctca |
10032957 |
T |
|
| Q |
607 |
aattgtttgtttgcagagaaat |
628 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
10032958 |
aattgtttgtttgcagagaaat |
10032979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 7 - 628
Target Start/End: Original strand, 10054270 - 10054891
Alignment:
| Q |
7 |
agagaagaatggaagaaccttgctatgcagcaaacatcgcttctgaaaaatatgactcttccctatctcacgtgagtttcttcttgttgctattaacacc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10054270 |
agagaagaatggaagaaccttgctatgcagcaaacatcgcttttgaaaaatatgactcttccctatctcacgtgagtttcttcttgttgctattaacacc |
10054369 |
T |
|
| Q |
107 |
atttcaattttgcaattcttgtcaaccagggatggaagtcttgctattatatattagaatgtgcataccatgctttaaaaatgtggtcgcaattgcagct |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10054370 |
atttcaattttgcatttcttgtcaaccagggatggaagtcttgctattatatattagaatgtgcataccatgctttaaaaatgtggtcacaattgcagct |
10054469 |
T |
|
| Q |
207 |
gtggttattccgcaaaccttttctttcttttagcggcatgcccttatgtatatgcctctttctatttgtcnnnnnnnctatcaactcaccaaagagcact |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| |
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| T |
10054470 |
gtggttattccgcaaaccttttctttcttttagcggcatgcccttatgtatatgcccctttctatttgtcaaaaaaactaccaactcaccaaagagcact |
10054569 |
T |
|
| Q |
307 |
ttaatgagatgatttgaatctcttcctgcttaactagaagtcttgggtttgaattcatacctgagaatatagtcgcgttaaaactattgaggatattgga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10054570 |
ttaatgagatgatttgaatctcttcctgcttaactagaagtcttgggtttgaattcatacctgagaatatagtcgcgttaaaactaatgaggatattgga |
10054669 |
T |
|
| Q |
407 |
ttatgtagttaatatacaagcctaaatcctaatcaatgactttgattttttcatagttagcatcttgagtatatctatattttgtttctcaagaaattgg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10054670 |
ttatgtagttaatatacaagcctaaatcctaatcaatgactttgattttttcatagttagcatcttgagtatatctatattttgtttctcaagaaattgg |
10054769 |
T |
|
| Q |
507 |
aagcatgtttctcaatcctaatctatttttggtgaaatggatgtttaattaaacatcgattagcattttgttaccaagctttacaatctaacatctctca |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10054770 |
aagcatgtttctcaatcctaatctatttttggtgaaatggatgtttaattaaacatcgattagcattttgttaccaagctttacaatctaacatctctca |
10054869 |
T |
|
| Q |
607 |
aattgtttgtttgcagagaaat |
628 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
10054870 |
aattgtttgtttgcagagaaat |
10054891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 10064361 - 10064511
Alignment:
| Q |
9 |
agaagaatggaagaaccttgctatgcagcaaacatcgcttctgaaaaatatgactcttccctatctcacgtgagtttcttcttgttgctattaacaccat |
108 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10064361 |
agaagaatggaagaaccttgccatgcagcagccatcccttctgacaaatatgactcttccctatctcacgtgagtttcttcttgttgctattaacaccat |
10064460 |
T |
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| Q |
109 |
ttcaattttgcaattcttgtcaaccagggatggaagtcttgctattatata |
159 |
Q |
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||||||||||| ||||| ||||| |||||||| ||| ||||| | |||||| |
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| T |
10064461 |
ttcaattttgctattctggtcaatcagggatgaaagccttgcaagtatata |
10064511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 400 - 516
Target Start/End: Original strand, 10064617 - 10064726
Alignment:
| Q |
400 |
tattggattatgtagttaatatacaagcctaaatcctaatcaatgactttgattttttcatagttagcatcttgagtatatctatattttgtttctcaag |
499 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||| |
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| T |
10064617 |
tattggactatgtagttaatatacaagcctgaat-------aatgactttgattttgccgtagttagcatcttgaatatatctatattttgtatctcaag |
10064709 |
T |
|
| Q |
500 |
aaattggaagcatgttt |
516 |
Q |
| |
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|||||||| ||||||| |
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|
| T |
10064710 |
gaattggaaacatgttt |
10064726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 10075110 - 10075195
Alignment:
| Q |
41 |
catcgcttctgaaaaatatgactcttccctatctcacgtgagtttcttcttgttgctattaacaccatttcaa-ttttgcaattct |
125 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||||||||||| |
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|
| T |
10075110 |
catctcttctgaaaaatatgtctcttctgtatctgacgtgagtttcttcttgtcgctattaacgccatttcaatttttgcaattct |
10075195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 628
Target Start/End: Original strand, 10075377 - 10075442
Alignment:
| Q |
564 |
gattagcattttgttaccaagctttacaatctaacatctctcaaattg-tttgtttgcagagaaat |
628 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||||| ||||||| ||| ||||||||||||| |
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|
| T |
10075377 |
gattagcattttgttacctagctctagaatctaacatcgtacaaattgttttatttgcagagaaat |
10075442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 56203129 - 56203177
Alignment:
| Q |
41 |
catcgcttctgaaaaatatgactcttccctatctcacgtgagtttcttc |
89 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| | |||||||||||| |
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| T |
56203129 |
catcccttctgaaaaatatgactcttcagtatctgaagtgagtttcttc |
56203177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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