View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21365_low_2 (Length: 315)
Name: NF21365_low_2
Description: NF21365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21365_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 32368525 - 32368391
Alignment:
| Q |
169 |
tgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggag |
268 |
Q |
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| T |
32368525 |
tgaagtttggcacgatgtttccagctactaacaagaaaggagagtctaagctagagggatactctgattcagaccggtgtggagatagaatggataggag |
32368426 |
T |
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| Q |
269 |
aagcacttatggctacctattcaaattaaatgatg |
303 |
Q |
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| T |
32368425 |
aagtacttctggctgcctattcaaattcaatgatg |
32368391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 214
Target Start/End: Complemental strand, 32368639 - 32368534
Alignment:
| Q |
110 |
atccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaag |
208 |
Q |
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||||||||||||| |||||| ||| ||||||||||||||||||| |||||||||| ||| ||||||||| |||||||||||||||||||||||||||| | |
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| T |
32368639 |
atccaaggaaatctcatctcactgtagctaaaagaatactgagatatgtgaaaggaaccctgaagtttgccctgatgtttccagctactaacaagaaagg |
32368540 |
T |
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| Q |
209 |
agaggc |
214 |
Q |
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|||||| |
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| T |
32368539 |
agaggc |
32368534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 32368791 - 32368909
Alignment:
| Q |
3 |
tggattagatgcaatattacaataaataatttgaatcctttcaagtagttcaccaatgtacttttgttggtgcatcattatgcctgcattgctagttttg |
102 |
Q |
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| T |
32368791 |
tggattcgatgcaatgttgcagtcaatcatttgaaacctttcaagcagttccccaatgtacttttgttgatgcatcactatgcttgaattgctagttttg |
32368890 |
T |
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| Q |
103 |
aattgtaatccaaggaaat |
121 |
Q |
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| T |
32368891 |
aattctaatccaaggaaat |
32368909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 110 - 292
Target Start/End: Original strand, 26076334 - 26076517
Alignment:
| Q |
110 |
atccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaag |
208 |
Q |
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|||||||||| || |||||| ||||||||||||||||| ||||| |||||||||| || ||||||||||||||| | ||||||||| | || || | | |
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| T |
26076334 |
atccaaggaagtctcatctcactgcagctaaaagaatattgagatatgtgaaaggtacattgaagtttggcctgttatttccagctgcaaataaagtagg |
26076433 |
T |
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| Q |
209 |
agaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa |
292 |
Q |
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| T |
26076434 |
agaagctgaattagagggatactctgattcagactggtgtgaagatataatggataggaagagcacttatggctacctattcaa |
26076517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 26076182 - 26076064
Alignment:
| Q |
3 |
tggattagatgcaatattacaataaataatttgaatcctttcaagtagttcaccaatgtacttttgttggtgcatcattatgcctgcattgctagttttg |
102 |
Q |
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|||||| |||||| |||| |||| ||| ||||||| |||||||| ||||| ||||||||||| ||||| ||||||| ||||||||| ||||||||| || |
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| T |
26076182 |
tggatttgatgcattattgcaatcaatcatttgaaatctttcaagcagttctccaatgtacttctgttgatgcatcactatgcctgctttgctagttgtg |
26076083 |
T |
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| Q |
103 |
aattgtaatccaaggaaat |
121 |
Q |
| |
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| T |
26076082 |
aactcaaatccaaggaaat |
26076064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 110 - 292
Target Start/End: Complemental strand, 4958605 - 4958422
Alignment:
| Q |
110 |
atccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaag |
208 |
Q |
| |
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|||||||||| | |||||| ||||||| ||||| ||| ||||| |||||||||| || |||||||||||||| | || ||| || | ||||| || | |
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| T |
4958605 |
atccaaggaagtttcatctcactgcagcaaaaaggatattgagacatgtgaaaggcacactgaagtttggcctgttattcccaactgcaaacaaagaagg |
4958506 |
T |
|
| Q |
209 |
agaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa |
292 |
Q |
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||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||| | |||||| | | ||||||||||||| |
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| T |
4958505 |
agaagctgaactagagggatactctgattcagactggtgtggagatagaatggatagaaaaagcacctttagctacctattcaa |
4958422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 4958757 - 4958874
Alignment:
| Q |
3 |
tggattagatgcaatattacaataaataatttgaatcctttcaagtagttcaccaatgtacttttgttggtgcatcattatgcctgcattgctagttttg |
102 |
Q |
| |
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|||||| |||||| |||| |||| ||| ||||||| ||||||| ||||| ||||||||||| || || ||||||| ||||||||| ||||||||| || |
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| T |
4958757 |
tggatttgatgcattattgcaatcaatcatttgaaatatttcaagcagttctccaatgtacttctgctgatgcatcactatgcctgctttgctagttgtg |
4958856 |
T |
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| Q |
103 |
aattgtaatccaaggaaa |
120 |
Q |
| |
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|| | |||||||||||| |
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| T |
4958857 |
aactcaaatccaaggaaa |
4958874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 276
Target Start/End: Original strand, 5243143 - 5243310
Alignment:
| Q |
110 |
atccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaaggacct-tgaagtttggcctgatgtttccagctactaacaagaaaag |
208 |
Q |
| |
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|||||||||| || |||||| ||||||| |||| |||| ||||| ||||||||||| || | |||||||| || || || || || || ||| || | |
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| T |
5243143 |
atccaaggaagtctcatctcactgcagccaaaataataatgagatatgtgaaaggaactctaaagtttggtttgttgcttacaactgatagcaatgaagg |
5243242 |
T |
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| Q |
209 |
agaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcactt |
276 |
Q |
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| T |
5243243 |
aaaggctaagctagaaggatactcagattctgactggtgtggatagagaatggatagaagaagcactt |
5243310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 5242956 - 5242878
Alignment:
| Q |
43 |
tcaagtagttcaccaatgtacttttgttggtgcatcattatgcctgcattgctagttttgaattgtaatccaaggaaat |
121 |
Q |
| |
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||||| ||||| ||||| ||||||||||| ||||| | || ||| ||||||| | |||||||| |||||||||||||| |
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| T |
5242956 |
tcaagcagttccccaatatacttttgttgatgcattacaatacctacattgctggctttgaattctaatccaaggaaat |
5242878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 292
Target Start/End: Original strand, 12370874 - 12370945
Alignment:
| Q |
219 |
ctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa |
292 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||| |||||| | | ||||||||||||| |
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| T |
12370874 |
ctagagggatactctgattcagactggtgtggagatagaatgg--aggaaaagcacctctagctacctattcaa |
12370945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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