View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21366_high_1 (Length: 771)
Name: NF21366_high_1
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21366_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 19 - 576
Target Start/End: Original strand, 51411502 - 51412056
Alignment:
| Q |
19 |
aagatgagtgacatttctcatctaccttcaccacgatatttaaagaaaagaaatgccaacaaaaagcatattttagctggcaaatcctgacattcaggga |
118 |
Q |
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| T |
51411502 |
aagatgagtgacatttctcatctaccttcaccacgatatttaaagaaaagaaatgccaacaaaaagcatattttagctggcaaatcctgacattcaggga |
51411601 |
T |
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| Q |
119 |
agcagatttgtcaacccttctagtcttccagtgaaagcagcaatgaatatttcaacttatcaaactacagcttctagatattagaagagtaaatgctaca |
218 |
Q |
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| T |
51411602 |
agca---ttgtcaacccttctagtcttccagtgaaagcagcaatgaatatttcaacttatcaaactacagcttctagatattagaagagtaaatgctaca |
51411698 |
T |
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| Q |
219 |
actttgccctatatataagttttgcacattttctaccaaaaatttaaagtcattattctataaaataatgctgcagatatccttttccccacaccgtata |
318 |
Q |
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| T |
51411699 |
actttgccctatatataagttttgcacattttctaccaaaaatttaaagtcattattctataaaataatgctgcagatatccttttccccacaccgtata |
51411798 |
T |
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| Q |
319 |
tggaaatacaaatttatcacacaactcgcacgatgttgataggtaggtcaacttaggggtgtgcgattgagttgaacagggaacagataacaaagaaatt |
418 |
Q |
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| T |
51411799 |
tggaaatacaaatttatcacacaactcgcacgatgttgataggtaggtcaacttaggggtgtgcgattgagttgaacagggaacagataacaaagaaatt |
51411898 |
T |
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| Q |
419 |
caaaactgaacacttcagaacggtgcttcctatacactgggaaaagatgattcgctgcatactttgctagagttgatatgacaacatgtctctggacccc |
518 |
Q |
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| T |
51411899 |
caaaactgaacacttcagaacggtgcttcctatacactgggaaaagatgattcgctgcatactttgctagagttgatatgacaacatgtctctggacccc |
51411998 |
T |
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| Q |
519 |
ctaagtggctaatgaataatgtcaaaaatttcatttgttataaatttatagaacagca |
576 |
Q |
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| T |
51411999 |
ctaagtggctaatgaataatgtcaaaaatttcatttgttataaatttatagaacagca |
51412056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 624 - 771
Target Start/End: Complemental strand, 51412373 - 51412226
Alignment:
| Q |
624 |
acaatgaataacataaatcaggtatatagaagtgaaagttatatgtgttccatcacaggttgtaaaggtcgccgattttggcgttgccagagtgagagct |
723 |
Q |
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| T |
51412373 |
acaatgaataacataaatcaggtatatagaagtgaaagttatatgcgttccatcacaggttgtaaaggtcgcagattttggcgttgccagagtgagagct |
51412274 |
T |
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| Q |
724 |
caatctggagttatgacagcagaaactgggacatatcgttggatggct |
771 |
Q |
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| T |
51412273 |
caatctggagttatgacagcagaaactgggacatatcgttggatggct |
51412226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 571 - 622
Target Start/End: Complemental strand, 51412399 - 51412348
Alignment:
| Q |
571 |
acagcataccatatgtatggataaatacaatgaataacataagtcaggtata |
622 |
Q |
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| T |
51412399 |
acagcataccatatgtatggataaatacaatgaataacataaatcaggtata |
51412348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 771
Target Start/End: Original strand, 9208379 - 9208462
Alignment:
| Q |
688 |
aaggtcgccgattttggcgttgccagagtgagagctcaatctggagttatgacagcagaaactgggacatatcgttggatggct |
771 |
Q |
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| T |
9208379 |
aaggttgctgattttggggttgccagagtgcaaactcagtctggagtgatgacagctgaaactggaacgtaccgctggatggct |
9208462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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