View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21366_high_10 (Length: 514)

Name: NF21366_high_10
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21366_high_10
NF21366_high_10
[»] chr7 (2 HSPs)
chr7 (21-319)||(22276301-22276600)
chr7 (316-490)||(22275028-22275198)
[»] chr1 (3 HSPs)
chr1 (17-112)||(11038906-11039000)
chr1 (67-141)||(10682660-10682732)
chr1 (22-112)||(45982611-45982700)
[»] chr5 (1 HSPs)
chr5 (199-294)||(41486275-41486372)
[»] chr2 (2 HSPs)
chr2 (199-272)||(10850692-10850767)
chr2 (199-272)||(10878206-10878281)
[»] chr8 (1 HSPs)
chr8 (17-130)||(8234957-8235068)
[»] chr3 (1 HSPs)
chr3 (177-234)||(26150504-26150563)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 22276600 - 22276301
Alignment:
Q  21 gaagttgagtaggagataaaagataaagaaaaagctttagggaagtaaataaattttgcatgaaaatctctttgtagcttggagaaagagaacgtatttt 120  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  22276600 gaagttgagtaggagataaaagataaagaaaaagctttaatgaagtaaataaattttacatgaaaatctctttgtagcttggagaaagagaacatatttt 22276501  T
Q  121 tgcaaaataacactgacaaaaacaaaatgaatatnnnnnnn-tgtttctgaaaatgtgcactactttgttgtaggagattactataatttttctactttt 219  Q
    ||||||||||||||||| ||||||||||||||||        ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  22276500 tgcaaaataacactgactaaaacaaaatgaatataaaaaaaatgtttctaaaaatgt-cactactttgttgcaggagattactataatttttctactttt 22276402  T
Q  220 t-gcaatattaagataacttatatacttaattagataatactagtactacgaacggacgtgtaccaaaactttatatcacatacgtaatgaattcttctc 318  Q
    | |||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  22276401 ttgcaatattaagataacttatatacttaattaggtaatattagtactacgaaccgacgtgtaccggaactttatatcacatacgtaatgaattcttctc 22276302  T

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Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 316 - 490
Target Start/End: Complemental strand, 22275198 - 22275028
Alignment:
Q  316 ctcacaaaaatgatcatcctatcatactgatagtagctagctacacttacctatcggttttatttataagttgcccttcacaatcagttagtttgaagtg 415  Q
    |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22275198 ctcacaaaaatgatcatcctatcatactgatagtagcta----cacttacctatcggttttatttataatttgcccttcacaatcagttagtttgaagtg 22275103  T
Q  416 gatgtaactaactcttaactactataacaaaataggaaatagctatcacattaactttactagttactagcatag 490  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22275102 gatgtaactaactcttaactactaaaacaaaataggaaatagctatcacattaactttactagttactagcatag 22275028  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 11038906 - 11039000
Alignment:
Q  17 agatgaagttgagtaggagataaaagataaagaaaaagctttagggaagtaaataaattttgcatgaaaatctctttgtagcttggagaaagagaa 112  Q
    |||||||||||||||||||||||||||||||| |||| |||  | || | |||||||||||| || |||||||||||  |||||||||||||||||    
T  11038906 agatgaagttgagtaggagataaaagataaaggaaaaccttccgtgacgcaaataaattttggat-aaaatctctttaaagcttggagaaagagaa 11039000  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 10682732 - 10682660
Alignment:
Q  67 aaataaattttgcatgaaaatctctttgtagcttggagaaagagaacgtatttttgcaaaataacactgacaaaa 141  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||| |  | ||||||||||||||||| ||||    
T  10682732 aaataaattttgta-gaaaatctctttgaagcttggagaaagagaacat-gtcttgcaaaataacactgataaaa 10682660  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 45982611 - 45982700
Alignment:
Q  22 aagttgagtaggagataaaagataaagaaaaagctttagggaagtaaataaattttgcatgaaaatctctttgtagcttggagaaagagaa 112  Q
    |||||||||||||||| || ||||||  |||| |||  | |  | ||||||||||||||| |||||||||||| ||| |||||||||||||    
T  45982611 aagttgagtaggagatgaatgataaaagaaaaccttcggcggtgcaaataaattttgcat-aaaatctctttgaagcatggagaaagagaa 45982700  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 41486372 - 41486275
Alignment:
Q  199 tactataatttttctactt-tttgcaatattaagataacttat-atacttaattagataatactagtactacgaacggacgtgtaccaaaactttata 294  Q
    |||||||||  |||||||| ||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||| ||||  |||| || |||||||    
T  41486372 tactataatccttctacttgtttgcaatattaagatagcttattatacttaattaaatagtactagtactacgaaccgacgcatacctaatctttata 41486275  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 10850767 - 10850692
Alignment:
Q  199 tactataatttttctac-tttttgcaatattaagataactta-tatacttaattagataatactagtactacgaac 272  Q
    |||||||||  |||||| ||||||||||||||||||| |||| ||||||||||||| || ||||||||||||||||    
T  10850767 tactataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattactagtactacgaac 10850692  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 10878281 - 10878206
Alignment:
Q  199 tactataatttttctac-tttttgcaatattaagataactta-tatacttaattagataatactagtactacgaac 272  Q
    |||||||||  |||||| ||||||||||||||||||| |||| ||||||||||||| || ||||||||||||||||    
T  10878281 tactataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattactagtactacgaac 10878206  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 8234957 - 8235068
Alignment:
Q  17 agatgaagttgagtaggagataaaagataaagaaaaagctttagggaagtaaataaattttgcatgaaaatctctttgtagcttggagaaagagaacgta 116  Q
    |||||| ||||||||  ||||||||||||||| ||||  |   | || | ||||||||||||||| |||||||||||| | ||||||||||||||| ||     
T  8234957 agatgaggttgagtattagataaaagataaaggaaaacatacggtgatgcaaataaattttgcat-aaaatctctttgaaacttggagaaagagaatgt- 8235054  T
Q  117 tttttgcaaaataa 130  Q
     |||||||||||||    
T  8235055 cttttgcaaaataa 8235068  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 26150504 - 26150563
Alignment:
Q  177 gcactactttgttgtaggagattactataatttttctac--tttttgcaatattaagata 234  Q
    |||||| |||||||||| ||| |||||||||| ||||||  |||||||||||||||||||    
T  26150504 gcactagtttgttgtagcagactactataattcttctactttttttgcaatattaagata 26150563  T

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