View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21366_high_20 (Length: 214)

Name: NF21366_high_20
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21366_high_20
NF21366_high_20
[»] chr3 (2 HSPs)
chr3 (162-199)||(41406694-41406731)
chr3 (163-199)||(41408185-41408221)
[»] chr5 (1 HSPs)
chr5 (163-199)||(11632113-11632149)
[»] chr4 (2 HSPs)
chr4 (163-199)||(39398115-39398151)
chr4 (163-199)||(39400003-39400039)
[»] chr2 (1 HSPs)
chr2 (163-199)||(43141583-43141619)
[»] chr1 (3 HSPs)
chr1 (163-199)||(3811186-3811222)
chr1 (163-199)||(3814018-3814054)
chr1 (161-199)||(32703522-32703560)
[»] scaffold0048 (1 HSPs)
scaffold0048 (162-199)||(79484-79521)


Alignment Details
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 41406694 - 41406731
Alignment:
Q  162 ctgttaggagattaactcacagctatagagttagaagt 199  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41406694 ctgttaggagattaactcacagctatagagttagaagt 41406731  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 41408185 - 41408221
Alignment:
Q  163 tgttaggagattaactcacagctatagagttagaagt 199  Q
    |||||||||||||||||||||||||||||||||||||    
T  41408185 tgttaggagattaactcacagctatagagttagaagt 41408221  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 11632113 - 11632149
Alignment:
Q  163 tgttaggagattaactcacagctatagagttagaagt 199  Q
    |||||||||||||||||||||||||||||||||||||    
T  11632113 tgttaggagattaactcacagctatagagttagaagt 11632149  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 39398115 - 39398151
Alignment:
Q  163 tgttaggagattaactcacagctatagagttagaagt 199  Q
    |||||||||||||||||||||||||||||||||||||    
T  39398115 tgttaggagattaactcacagctatagagttagaagt 39398151  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 39400003 - 39400039
Alignment:
Q  163 tgttaggagattaactcacagctatagagttagaagt 199  Q
    |||||||||||||||||||||||||||||||||||||    
T  39400003 tgttaggagattaactcacagctatagagttagaagt 39400039  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 43141583 - 43141619
Alignment:
Q  163 tgttaggagattaactcacagctatagagttagaagt 199  Q
    |||||||||||||||||||||||||||||||||||||    
T  43141583 tgttaggagattaactcacagctatagagttagaagt 43141619  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 3811186 - 3811222
Alignment:
Q  163 tgttaggagattaactcacagctatagagttagaagt 199  Q
    |||||||||||||||||||||||||||||||||||||    
T  3811186 tgttaggagattaactcacagctatagagttagaagt 3811222  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 3814018 - 3814054
Alignment:
Q  163 tgttaggagattaactcacagctatagagttagaagt 199  Q
    |||||||||||||||||||||||||||||||||||||    
T  3814018 tgttaggagattaactcacagctatagagttagaagt 3814054  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 32703522 - 32703560
Alignment:
Q  161 tctgttaggagattaactcacagctatagagttagaagt 199  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  32703522 tctgttaggagattaactcacagctatacagttagaagt 32703560  T

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Target: scaffold0048 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 79484 - 79521
Alignment:
Q  162 ctgttaggagattaactcacagctatagagttagaagt 199  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  79484 ctgttaggagattaactcacaactatacagttagaagt 79521  T

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