View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21366_high_7 (Length: 568)
Name: NF21366_high_7
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21366_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 230 - 558
Target Start/End: Original strand, 34566723 - 34567051
Alignment:
| Q |
230 |
taattattatattctatgtcaacttgtgaggaggcaagccatctcaaatcccttgtgagggattacgatgtcaacttgttcaaagaagaaaactataata |
329 |
Q |
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| T |
34566723 |
taattattatattctatgtcaacttgtgaggaggcaagccatctcaaatcccttgtgagggattacgatgtcaacttgttcaaagaagaaaactataata |
34566822 |
T |
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| Q |
330 |
gggatccaattatttcttggactacttatcctaccatagttgagaaccatcaaactatttaagtgtgaatattcattttagtgagtgtaaggaagctttg |
429 |
Q |
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| T |
34566823 |
gagatccaattatttcttggactacttatcctaccatagttgagaaccatcaaactatttaagtgtgaatattcattttagtgagtgtaaggaagctttg |
34566922 |
T |
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| Q |
430 |
tttaatatgaatcctcataagacgcctggagaagacgggtaccctgctcttttcttctaataatgttggaacactatttctgagtcattgtaccggtatg |
529 |
Q |
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| T |
34566923 |
tttaatatgaatcctcataagacgcccggagaagacgggtaccctgctcttttcttctaataatgttggaacactatttctgagtcattgtaccagtatg |
34567022 |
T |
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| Q |
530 |
tgaaccatgttttggttaatccttttctt |
558 |
Q |
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| T |
34567023 |
tgaaccatgttttggttaatccttttctt |
34567051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 34565865 - 34566079
Alignment:
| Q |
19 |
agatttggaagcacaaaatgttcctgaatagataatttgatgttttttgttaattcataaatctctttggattagtattttgttaagcctaccactttca |
118 |
Q |
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| T |
34565865 |
agatttggaagcacaaaatgttcctgaatagataatttgatgtgttttgttaattcataaatctctttggattagtattttgttaagcctaccactttca |
34565964 |
T |
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| Q |
119 |
actttctgttggttagtattatgtatttgaaattgtatttcaaataaatagaaatcatgtaatgtttctttgagagaaaaaatatataatg-ttattata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34565965 |
actttctgttggttagtattatgtatttgaaattgtatttcaaataaatagaaatcatgtaatgtttctttgagagaaaaaatatataatgtttattata |
34566064 |
T |
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| Q |
218 |
gtggtacgagcttaa |
232 |
Q |
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| T |
34566065 |
atggtacgagcttaa |
34566079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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