View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21366_low_12 (Length: 449)
Name: NF21366_low_12
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21366_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 162 - 431
Target Start/End: Original strand, 45634609 - 45634878
Alignment:
| Q |
162 |
aagcaccgcctctgtactacatacataccatcagaaggatgttgcaatagaagcactaccagcctcaaccttaacagcaagacgcatgccacttgaacaa |
261 |
Q |
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| T |
45634609 |
aagcaccgcctctgtactacatacataccatcagaaggatgttgcaatagaagcactaccagcctcaaccttaacagcaagacgcatgccacttgaacaa |
45634708 |
T |
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| Q |
262 |
tctccaaaagtagcagatatgaaataatgagttcctgcagtcttaagagctatggttgtctcaccactattgtctgaactaattggatttccagtggtgc |
361 |
Q |
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| T |
45634709 |
tctccaaaagtagcagatatgaaataatgagttcctgcagtcttaagagctatggttgtctcaccactattgtctgaactaattggatttccagtggtgc |
45634808 |
T |
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| Q |
362 |
aggagatgtaatcacttgctgcaacttcatccacagtgtgtatagccccatagagaaacactgtcatatt |
431 |
Q |
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| T |
45634809 |
aggagatgtagtcacttgctgcaacttcatccacagtgtgtatagccccatagagaaacactgtcatatt |
45634878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 45634450 - 45634531
Alignment:
| Q |
1 |
acacaacaagcacacgacacatagtttaaaaatgaaaacaattaatagtagctacaagaacctttataaatctgaatggatc |
82 |
Q |
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| T |
45634450 |
acacaacacgcacacgacacatagtttaaaaatgaaaacaattaatagtagctacaagaacctttataaatctgaatggatc |
45634531 |
T |
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