View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21366_low_14 (Length: 420)
Name: NF21366_low_14
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21366_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 32731689 - 32731303
Alignment:
| Q |
16 |
gatgaacaaacagacaaagtaatccattgggagagtttccctatatattgtctgacaagtgataggtactgaatgccaatatataaaacaataattcaag |
115 |
Q |
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| T |
32731689 |
gatgaacaaacagacaaagtaatgcattgggagagtttccctatatatcgtctgacaagtgataggtactgaatgccaatatataaaacaataattcaag |
32731590 |
T |
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| Q |
116 |
gcttagannnnnnn-agtatatacatttggcacatgataatattatcttctgacatttgtgtcaactaaaattttgttctttctaagaataatttcctaa |
214 |
Q |
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| T |
32731589 |
gcttagattttttttagtatatacatttggcacatgataatattatcttctgacatttgtgtcaactaaaattttgttctttctaagaataatttcctaa |
32731490 |
T |
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| Q |
215 |
gcacgttaattagtgacaagaattnnnnnnnnnnnnnnnnttttaagcttctttttatggtcattgagtgttttggataatttatgttgtgcattgtgca |
314 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32731489 |
gcacgttaattagtgacaagaattaaaaaataaataaaaattttaagcttctttttatggtcattgagtgttttggataatttatgttgtgcattgttct |
32731390 |
T |
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| Q |
315 |
atcgtgaagttcaagaaatatttactactcaattccgatataatttttataaaatttgtatgagatctatataattgatatagaatg |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32731389 |
atcgtgaagttcaagaaatatttactactcaattccgatataatttttataaaatttgtatgagatctatataattgatatagaatg |
32731303 |
T |
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