View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21366_low_15 (Length: 375)
Name: NF21366_low_15
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21366_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 5383832 - 5383951
Alignment:
| Q |
24 |
ccctttcagatccctaaccccttttccatcaccttcgcaactcttctccctctcatcatcgtctttgtcgtcgtcgttgtttccggcgaggcaatcgttg |
123 |
Q |
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| T |
5383832 |
ccctttcagatccctaaccccttttccatcacctttgcaactcttctccctctcatcatcgtctttgtcgtcgttgttgtttccggcgaggcaatcgttg |
5383931 |
T |
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| Q |
124 |
ccgacgtgtagcacaacaac |
143 |
Q |
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| T |
5383932 |
ccgacgtgtagcacaacaac |
5383951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 5384010 - 5384057
Alignment:
| Q |
202 |
aattgttgtgaggtactgagtattatttgttatattgaattctactaa |
249 |
Q |
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| T |
5384010 |
aattgttgtgaggtactgagttttatttgttatattgaattctactaa |
5384057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 37323907 - 37323788
Alignment:
| Q |
24 |
ccctttcagatccctaaccccttttccatcaccttcgcaactcttctccctctcatcatcgtctttgtcgtcgtcgttgtttccggcgaggcaatcgttg |
123 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| |
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| T |
37323907 |
ccctttcagaaccctaaccccttttccatcaccttcgcaactcttctccctctcatcatcgtctatgtcgtcgtagttgtttccggcaaggcaatcgttg |
37323808 |
T |
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| Q |
124 |
ccgacgtgtagcacaacaac |
143 |
Q |
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| T |
37323807 |
ccaacgtgtagcacaacaac |
37323788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 37323729 - 37323681
Alignment:
| Q |
202 |
aattgttgtgaggtactgagtattatttgttatattgaattctactaag |
250 |
Q |
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| T |
37323729 |
aattgttgtgaggtactgagttttatttgttatattgaattctactaag |
37323681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 34616580 - 34616540
Alignment:
| Q |
202 |
aattgttgtgaggtactgagtattatttgttatattgaatt |
242 |
Q |
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||||||||||||||||||| | ||||||||| ||||||||| |
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| T |
34616580 |
aattgttgtgaggtactgaattttatttgttgtattgaatt |
34616540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 8372145 - 8372177
Alignment:
| Q |
99 |
gttgtttccggcgaggcaatcgttgccgacgtg |
131 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
8372145 |
gttgtttccggcgaggcaatcgtttccgacgtg |
8372177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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