View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21366_low_16 (Length: 374)

Name: NF21366_low_16
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21366_low_16
NF21366_low_16
[»] chr3 (7 HSPs)
chr3 (20-359)||(26314408-26314747)
chr3 (20-359)||(28566516-28566859)
chr3 (26-351)||(28584497-28584826)
chr3 (20-351)||(28573261-28573597)
chr3 (21-148)||(20615182-20615309)
chr3 (254-343)||(20615835-20615924)
chr3 (25-138)||(21642289-21642402)
[»] scaffold0927 (1 HSPs)
scaffold0927 (20-359)||(91-437)
[»] chr6 (3 HSPs)
chr6 (20-359)||(24080447-24080783)
chr6 (20-359)||(24069953-24070289)
chr6 (82-138)||(30399698-30399754)
[»] chr2 (4 HSPs)
chr2 (20-150)||(2603073-2603203)
chr2 (21-140)||(2591799-2591918)
chr2 (20-150)||(2599922-2600053)
chr2 (258-312)||(2602807-2602861)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 359
Target Start/End: Original strand, 26314408 - 26314747
Alignment:
Q  20 gagacgtttccattcatttgaaatcatgtgagcaacatgtctttggacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26314408 gagacgtttccattcatttgaaatcatgtgagcaacatgtctttgcacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgaa 26314507  T
Q  120 ccatcaagaccattttgatctccactctgcaatcaagataattcttatgattagaactttacatttaacaattgagttaattggttgaacaatttagtcg 219  Q
    ||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  26314508 ccatcaagaccattttgatctccactctgcaatcatgatggttcttataattagaactttacatttaacaattgagttaattggttgaacaatttaatca 26314607  T
Q  220 ataacttgcttaatactctaatttaggaaacatgtttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatatgaca 319  Q
    |  ||||| |||||  |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26314608 aatacttgtttaattttctaatttaggagacatatttcttaccttagctccttctaaatcatcagagagacgaagaattttcgccactgaatatatgaca 26314707  T
Q  320 tctgggaatttttcatccaagatatcaattgtctcctttg 359  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  26314708 tttgggaatttttcatccaagatatcaattgtctcctttg 26314747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 20 - 359
Target Start/End: Original strand, 28566516 - 28566859
Alignment:
Q  20 gagacgtttccattcatttgaaatcatgtgagcaacatgtctttggacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgac 119  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  28566516 gagacatttccattcatttgaaatcatgtgagcaacatgtcgttgcacgtcttcactggaaatatcttggtgttcactcatgtagcaatcaaggtatgac 28566615  T
Q  120 ccatcaagaccattttgatctccactctgcaatcaa----gataattcttatgattagaactttacatttaacaattgagttaattggttgaacaattta 215  Q
    ||||||||||||||||||||||||||||||| |||     ||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||||||    
T  28566616 ccatcaagaccattttgatctccactctgcattcatccatgataactcttatcattagaactttacatttaacaatcgagttaagtggttgaacaattta 28566715  T
Q  216 gtcgataacttgcttaatactctaatttaggaaacatgtttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatat 315  Q
     ||||  ||||| |||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28566716 atcgaatacttgtttaatattctaatttaggagacatatttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatat 28566815  T
Q  316 gacatctgggaatttttcatccaagatatcaattgtctcctttg 359  Q
     |||| |||||| |||||||||||||||||||||||||||||||    
T  28566816 aacatttgggaaattttcatccaagatatcaattgtctcctttg 28566859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 26 - 351
Target Start/End: Original strand, 28584497 - 28584826
Alignment:
Q  26 tttccattcatttgaaatcatgtgagcaacatgtctttggacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgacccatca 125  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28584497 tttccattcatttgaaatcatgtgagcaacatgtccttgcacgtcttcactggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatca 28584596  T
Q  126 agaccattttgatctccactctgcaatcaa----gataattcttatgattagaactttacatttaacaattgagttaattggttgaacaatttagtcgat 221  Q
    ||||||||||||||||||||||||| |||     |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||     
T  28584597 agaccattttgatctccactctgcattcatccatgataattcttatcattagaactttacatttaacaatcgagttaagtggttgaacaatttaatcgaa 28584696  T
Q  222 aacttgcttaatactctaatttaggaaacatgtttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatatgacatc 321  Q
     ||||| |||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28584697 tacttgtttaatattctaatttaggagacatatttcataccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatatgacatt 28584796  T
Q  322 tgggaatttttcatccaagatatcaattgt 351  Q
    ||| || |||||||||||||||||||||||    
T  28584797 tggaaacttttcatccaagatatcaattgt 28584826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 28573261 - 28573597
Alignment:
Q  20 gagacgtttccattcatttgaaatcatgtgagcaacatgtctttggacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgac 119  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28573261 gagacatttccattcatttgaaatcatgtgagcaacatgtctttgcacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaaggtatgac 28573360  T
Q  120 ccatcaagaccattttgatctccactctgcaatc--------aagataattcttatgattagaactttacatttaacaattgagttaattggttgaacaa 211  Q
    ||||||||||||||||| ||||||||||||| ||        |  ||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||    
T  28573361 ccatcaagaccattttgctctccactctgcattcattcatggataataattcttatcattagaactttacattttacaattgcgttaattggttgaacaa 28573460  T
Q  212 tttagtcgataacttgcttaatactctaatttaggaaacatgtttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaat 311  Q
    |||| || |  | ||| ||||||   |||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28573461 tttaatcaaatatttgtttaata---taatttaggagacatatttcataccttagctccttctaaatcatcagagagacgaagaatttttgccactgaat 28573557  T
Q  312 atatgacatctgggaatttttcatccaagatatcaattgt 351  Q
    ||||||||| ||| || |||||||||||||||||||||||    
T  28573558 atatgacatttggaaacttttcatccaagatatcaattgt 28573597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 20615182 - 20615309
Alignment:
Q  21 agacgtttccattcatttgaaatcatgtgagcaacatgtctttggacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgacc 120  Q
    |||| ||||||||||||| ||||||| | ||||||||||||||| || |||||||  |||||||||||||| |||||||||||||||| ||||||||| |    
T  20615182 agacatttccattcatttaaaatcatctcagcaacatgtctttgcacatcttcacatgaaatatcttggtgctcactcatgtagcaattaagatatgatc 20615281  T
Q  121 catcaagaccattttgatctccactctg 148  Q
    ||||||||||||||||||||||||||||    
T  20615282 catcaagaccattttgatctccactctg 20615309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 254 - 343
Target Start/End: Original strand, 20615835 - 20615924
Alignment:
Q  254 tttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatatgacatctgggaatttttcatccaagata 343  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||| |||||| ||||||    
T  20615835 tttcttaccttaactccttctaaatcatcagagagacgaagaatttttgccactgaataaatgatatttggaaattcttcatctaagata 20615924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 21642289 - 21642402
Alignment:
Q  25 gtttccattcatttgaaatcatgtgagcaacatgtctttggacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgacccatc 124  Q
    ||||||||||| |||||||  ||| ||||||||| |||||  | ||||||   | | |||||||||||||| ||||||| |||||||||||||| |||||    
T  21642289 gtttccattcaattgaaattttgttagcaacatgcctttgtgcctcttcagttgtactatcttggtgttcattcatgtaacaatcaagatatgatccatc 21642388  T
Q  125 aagaccattttgat 138  Q
    |||||| |||||||    
T  21642389 aagaccgttttgat 21642402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 437 - 91
Alignment:
Q  20 gagacgtttccattcatttgaaatcatgtgagcaacatgtctttggacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgac 119  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||| || ||||||||||||||||||||||||||||||    
T  437 gagacatttccattcatttgaaatcatgtgagcaacatgtgtttgcacgtcttcactggaaatatcctgatgttcactcatgtagcaatcaagatatgac 338  T
Q  120 ccatcaagaccattttgatctccactctgcaatcaag--------ataattcttatgattagaactttacatttaacaattgagttaattggttgaacaa 211  Q
    || |||||||||||||||||||||||||||| |||          ||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||    
T  337 ccgtcaagaccattttgatctccactctgcattcattcattgataataattcttatcattagaactttacattttacaattgtgttaattggttgaacaa 238  T
Q  212 tttagtcgataacttgcttaatactctaatttaggaaacatgtttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaat 311  Q
    |||| || |  ||||| |||| | ||||||||| || | || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  237 tttaatcaaatacttgtttaa-attctaatttatgagatatatttcttaccttagctccttctaaatcatcagcgagacgaagaatttttgccactgaat 139  T
Q  312 atatgacatctgggaatttttcatccaagatatcaattgtctcctttg 359  Q
    |||| |||| ||| || |||||||||||||||||| ||||||||||||    
T  138 atataacatttggaaaattttcatccaagatatcagttgtctcctttg 91  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 24080783 - 24080447
Alignment:
Q  20 gagacgtttccattcatttgaaatcatgtgagcaacatgtctttggacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgac 119  Q
    ||||| |||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  24080783 gagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacgtcttccccggaaatatcttggtgttcactcatgaagcaatcaagatatgac 24080684  T
Q  120 ccatcaagaccattttgatctccactctgcaatc--------aagataattcttatgattagaactttacatttaacaattgagttaattggttgaacaa 211  Q
    |||||||||||||||||||||||||||| || ||        |  ||||||||||| ||||||||||||||||||||| ||||| |||| ||| ||||||    
T  24080683 ccatcaagaccattttgatctccactctacattcatccatggataataattcttatcattagaactttacatttaacagttgag-taatcggtagaacaa 24080585  T
Q  212 tttagtcgataacttgcttaatactctaatttaggaaacatgtttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaat 311  Q
    | ||      | | | |   |||     |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24080584 tata------atcatccaagata----tatttgggagacatatttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccaccgaat 24080495  T
Q  312 atatgacatctgggaatttttcatccaagatatcaattgtctcctttg 359  Q
    ||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  24080494 atatgacatttggaaaattttcatccaagatatcaactgtctcctttg 24080447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 20 - 359
Target Start/End: Original strand, 24069953 - 24070289
Alignment:
Q  20 gagacgtttccattcatttgaaatcatgtgagcaacatgtctttggacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgac 119  Q
    ||||| |||||||||||||||||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||| || |||||||||||||||||    
T  24069953 gagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacctcttcgccggaaatatcttggtgttcactcttgaagcaatcaagatatgac 24070052  T
Q  120 ccatcaagaccattttgatctccactctgcaatc--------aagataattcttatgattagaactttacatttaacaattgagttaattggttgaacaa 211  Q
    |||||||||||||||||||| |||||||||| ||        |  ||||||||||| ||||||||||||||||||||| ||||| |||| ||| ||||||    
T  24070053 ccatcaagaccattttgatcaccactctgcattcatccatggataataattcttatcattagaactttacatttaacagttgag-taatcggtagaacaa 24070151  T
Q  212 tttagtcgataacttgcttaatactctaatttaggaaacatgtttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaat 311  Q
    | ||      | | | |   |||     |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24070152 tata------atcatccaagata----tatttgggagacatatttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccaccgaat 24070241  T
Q  312 atatgacatctgggaatttttcatccaagatatcaattgtctcctttg 359  Q
    ||||||||| ||| |||||||||||||||||||||| |||||||||||    
T  24070242 atatgacatttggaaatttttcatccaagatatcaactgtctcctttg 24070289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 30399754 - 30399698
Alignment:
Q  82 tatcttggtgttcactcatgtagcaatcaagatatgacccatcaagaccattttgat 138  Q
    |||||||||||||| |||||||  ||||||||||||| |||||||||||||||||||    
T  30399754 tatcttggtgttcattcatgtaataatcaagatatgatccatcaagaccattttgat 30399698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 2603203 - 2603073
Alignment:
Q  20 gagacgtttccattcatttgaaatcatgtgagcaacatgtctttggacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgac 119  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  | |||| | | ||||| |||||||||||| ||||||||||||| |||||||||    
T  2603203 gagacgtttccattcatttgaaatcatgttagcaacatgtctttgtgcctcttgagctgaaatctcttggtgttcattcatgtagcaatctagatatgac 2603104  T
Q  120 ccatcaagaccattttgatctccactctgca 150  Q
    ||||||||||| ||||||||| |||||||||    
T  2603103 ccatcaagaccgttttgatctacactctgca 2603073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 2591918 - 2591799
Alignment:
Q  21 agacgtttccattcatttgaaatcatgtgagcaacatgtctttggacgtcttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgacc 120  Q
    |||||||||||||||||||||||||| ||||||||||| |||||    ||||||   | ||||| |||||||||| ||||||| |||||||||||||| |    
T  2591918 agacgtttccattcatttgaaatcatatgagcaacatgcctttgtgtctcttcagttgtaatattttggtgttcattcatgtaacaatcaagatatgatc 2591819  T
Q  121 catcaagaccattttgatct 140  Q
    |||||||||| |||||||||    
T  2591818 catcaagaccgttttgatct 2591799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 2600053 - 2599922
Alignment:
Q  20 gagacgtttccattcatttgaaatcatgtgagcaacatgtctttggacgtcttcaccggaaatatcttggtgttcactcatgtagcaatc-aagatatga 118  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||  | ||||||   | | |||||||||||||| ||||||| ||||| |||||||||    
T  2600053 gagacgtttccattcatttgaaatcatgttagcaacatgcctttgtgcctcttcagttgtactatcttggtgttcattcatgtaacaatcaaagatatga 2599954  T
Q  119 cccatcaagaccattttgatctccactctgca 150  Q
     ||||||||||| |||||||||  ||||||||    
T  2599953 tccatcaagaccgttttgatctaaactctgca 2599922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 2602861 - 2602807
Alignment:
Q  258 ttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaata 312  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||    
T  2602861 ttaccttagctccttccaaatcatcagaaagacggagaatttttgctactgaata 2602807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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