View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21366_low_17 (Length: 366)
Name: NF21366_low_17
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21366_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 6036485 - 6036835
Alignment:
| Q |
9 |
aggacggaatgctttagtggggcttcaatattgctgcaaggccactatcaatgaagcaggtcaattaaaggatcaacacaaaatcaattagttttgtacc |
108 |
Q |
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| T |
6036485 |
aggacggaatgctttagtggggcttcaatattgctgcaaggccactatcaatgaagcaggtcaattaaaggatcaacacaaaatcaattagttttgtacc |
6036584 |
T |
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| Q |
109 |
aatatataaacatcttgtatagaaaagttgaacaaattactttcagtttcacaatgggtgttttctaccatgaggaggagcaaccaaaccattccaagag |
208 |
Q |
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| T |
6036585 |
aatatataaacatcttgtatagaaaagttgaacaatttactttcagtttcacaatgggtgttttctaccatgaggaggagcaaccaaaccattccaagag |
6036684 |
T |
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| Q |
209 |
atgcaaatgctttgcagctgctctgaaggaggttttcacacactgtcaaacttttggtcgaagtcgaaggctttccactacaagccttgaagaggagttt |
308 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6036685 |
atgcaaatgctttgcaactgctctgaaggaggttttcacacactgtcaaacttttggtcgaagtcgaaggctttcgactacaagccttgaagaggagttt |
6036784 |
T |
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| Q |
309 |
ccaattagtgatcttgatgaagaacaggaagtatattatacattcatttca |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6036785 |
ccaattagtgatcttgatgaagaacaggaagtatattatacattcacttca |
6036835 |
T |
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