View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21366_low_19 (Length: 275)
Name: NF21366_low_19
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21366_low_19 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 34228620 - 34228894
Alignment:
| Q |
1 |
tctggcttattccgaagtgtgaaaatcctatttccatgaggggtttgtgtcctatctagttgtgtaacgtattgtataaaatgatttccaaacttcttgc |
100 |
Q |
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| T |
34228620 |
tctggcttattccgaagtgtgaaaatcctatttccatgagggatttgtgtcctatctagttgtgtaacgtcttgtataaaatgatttccaaacttcttgc |
34228719 |
T |
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| Q |
101 |
taacaaattgaaatgctgccttgacaagtgtatttctcatgaagaatatgctttcgtggaggctattgaagtaattcatgcctcgaaaagggtggagtgg |
200 |
Q |
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| T |
34228720 |
taacagattgaaatgctgccttgacaagtgtatttctcatgaagaatatgctttcgtggaggctattgaagtaattcatgcctcgaaaagggtggagtgg |
34228819 |
T |
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| Q |
201 |
cgatgcaagggtggagtggcgtatcttgcagaaactggactctttggtggcaataattctcaaagcaagatactt |
275 |
Q |
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| T |
34228820 |
cgatgcaagggtggagtggcgtatcttgcagaaactggacactttggtggcaataattctcaaagcaagatactt |
34228894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 34237455 - 34237514
Alignment:
| Q |
216 |
gtggcgtatcttgcagaaactggactctttggtggcaataattctcaaagcaagatactt |
275 |
Q |
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| T |
34237455 |
gtggcgtatcttgcagaaactggactctttggtggcaaaaattctcaaatcaatatactt |
34237514 |
T |
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