View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21366_low_3 (Length: 687)

Name: NF21366_low_3
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21366_low_3
NF21366_low_3
[»] chr8 (4 HSPs)
chr8 (12-665)||(25221107-25221763)
chr8 (16-635)||(26172687-26173309)
chr8 (258-614)||(26397484-26397837)
chr8 (66-110)||(1908220-1908264)
[»] chr4 (4 HSPs)
chr4 (16-664)||(8352537-8353196)
chr4 (454-513)||(41242340-41242399)
chr4 (56-109)||(21074751-21074804)
chr4 (454-502)||(49463218-49463266)
[»] chr6 (1 HSPs)
chr6 (454-513)||(28130721-28130780)
[»] chr2 (1 HSPs)
chr2 (72-110)||(8509654-8509692)
[»] chr7 (4 HSPs)
chr7 (136-169)||(5843640-5843673)
chr7 (56-105)||(13043504-13043553)
chr7 (445-513)||(29464909-29464977)
chr7 (73-109)||(34605344-34605380)


Alignment Details
Target: chr8 (Bit Score: 539; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 12 - 665
Target Start/End: Complemental strand, 25221763 - 25221107
Alignment:
Q  12 atgaatataaataaacaattcaatccatataaaatgagctgaattaactaagtaattgagctcaagtagttaacgagtttcatcaatgacgaattgtttc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25221763 atgaatataaataaacaattcaatccatataaaatgagctgaattaactaa-taattgagctcaagtagttaacgagtttcatcaatgacgaattgtttc 25221665  T
Q  112 gcaaaacctcaccttgattcttgatggaacaatttttagtcaaactttacttacctctgaccaaactttgaaataccgggttccccnnnnnnn---agag 208  Q
    | | || ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||          ||||    
T  25221664 gaagaatctcactttgattcttgatggaacagtttttagtcaaactttacttacctctgaccaagctttgaaataccgggttccccttttttttttagag 25221565  T
Q  209 ctagagggttnnnnnnnnc-ctgaattttggagaaaattgaaattactatcatacttcatagttaattagatatcattgtaacgactatatacttatatc 307  Q
    ||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25221564 ctagagggttaaaaaaaaaactgaattttggagaaaattgaaattactatcatacttcatagttaattagatatcattgtaacgactatatacttatatc 25221465  T
Q  308 aatttatttgttaatcgtgcagcttgtgtcaaatgacaatttcagtagtgtttatcatcgggtactatcaaatcataaaggcccaagagtttctgtagct 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25221464 aatttatttgttaatcgtgcagcttgtgtcaaatgacaatttcagtagtgtttatcatcgggtactatcaaatcataaaggcccaagagtttctgtagct 25221365  T
Q  408 gccttctttggaacttctcatgatcttgataaagcttcatcaatgatttatggtcctattaaagaattgatctcagaagagaacccaccaatctatagag 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25221364 gccttctttggaacttctcatgatcttgataaagcttcatcaatgatttatggtcctattaaagaattggtctcagaagagaacccaccaatctatagag 25221265  T
Q  508 atattagcttagcagaatacatgtcacaccatttgacaaaggggcttgatgggaactctgcattgcacccttttaggttgtaaaaggaacatatttcaac 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25221264 atattagcttagcagaatacatgtcacaccatttgacaaaggggcttgacgggaactctgcattgcacccttttaggttgtaaaaggaacatattttaac 25221165  T
Q  608 tcaaaaataaacttaataagttgatactcttctgttgagtgtaaggttgtggtttttg 665  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25221164 tcaaaaataaacttaataagttgatattcttctgttgagtgtaaggttgtggtttttg 25221107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 635
Target Start/End: Original strand, 26172687 - 26173309
Alignment:
Q  16 atataaataaacaattcaatccatataaaatgagctgaattaactaagtaattgagctcaagtagttaacgagtttcatcaatgacgaattgtttcgcaa 115  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||| |||||| ||||| ||||||||||||||| ||||| ||| | |     
T  26172687 atataaatatacaattcaatctatataaaatgagctaaattaaccaagtaattgagttcaagtggttaatgagtttcatcaatgatgaattattttggat 26172786  T
Q  116 aacctcaccttgattcttgatggaacaatttttagtcaaactttacttacctctgaccaaactttgaaatacc-gggttccccnnnnnnnagagctagag 214  Q
    || || || |||||| ||||| |||||||||||||||| |||| | |||||||||||||||||   ||||||| |||| ||         ||| ||||||    
T  26172787 aatctgactttgatttttgatagaacaatttttagtcatacttcatttacctctgaccaaactcaaaaataccagggtccctttttctttagaactagag 26172886  T
Q  215 ggttnnnnnnnncctgaattttggaga--aaattgaaattactatcatacttcatagttaattagatatcattgtaacgactatatacttatatcaattt 312  Q
    ||||           |||||||| | |  ||| |||||||| | ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26172887 ggttaaaaaaaa-aagaattttgtataaaaaaatgaaattattgtcataattcatagttaattagatatcattgtaacgaatatatacttatatcaattt 26172985  T
Q  313 atttgttaatc-gtgcagcttgtgtcaaatgacaatttcagtagtgtttatcatcgggtactatcaaatcataaaggcccaagagtttctgtagctgcct 411  Q
    |||||||||||  | |||||| | |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  26172986 atttgttaatctttacagcttatatcaaatgacaattttagtagtgtttatcatcgggtgttatcaaatcataaaggcccaagagtttctgtagctgcct 26173085  T
Q  412 tctttggaacttctcatgatcttgataaagcttcatcaatgatttatggtcctattaaagaattgatctcagaagagaacccaccaatctatagagatat 511  Q
    ||||||||| |||||||||||| || ||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||     
T  26173086 tctttggaaattctcatgatctggagaaagcttcatcaacgatttatggtcctattaaagaattgttatcagaagagaacccaccaatctatagagatac 26173185  T
Q  512 tagcttagcagaatacatgtcacaccatttgacaaaggggcttgatgggaactctgcattgcacccttttaggttgtaaaaggaacatatttcaactcaa 611  Q
    |||||||| ||||| |||||||||| ||||||| |||||||||  ||||||||||||||||||  ||||||||||||||||| | ||||||||||||| |    
T  26173186 tagcttaggagaattcatgtcacactatttgacgaaggggctttttgggaactctgcattgcaatcttttaggttgtaaaagtatcatatttcaactcca 26173285  T
Q  612 aaataaacttaataagttgatact 635  Q
    ||||||||||||||||||||||||    
T  26173286 aaataaacttaataagttgatact 26173309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 258 - 614
Target Start/End: Original strand, 26397484 - 26397837
Alignment:
Q  258 catacttcatagttaattagatatcattgtaacgactatatacttatatcaatttatttgttaatcgtgcagcttgtgtcaaatgacaatttcagtagtg 357  Q
    |||||||||||||||  ||||| |||||||||    ||||||||||||  ||||||||||| |||  | |||||| |  |||||||||||||    ||||    
T  26397484 catacttcatagttacgtagatgtcattgtaat---tatatacttatagaaatttatttgtcaatgttacagcttataacaaatgacaattttgtcagtg 26397580  T
Q  358 tttatcatcgggtactatcaaatcataaaggcccaagagtttctgtagctgccttctttggaacttctcatgatcttgataaagcttcatcaatgattta 457  Q
    ||| |||||| ||  ||| || | ||||||| ||||||||||||||||||   |||||||||| |  | ||||| | ||| || |||| |||| | ||||    
T  26397581 tttttcatcgagtgttattaagtgataaaggaccaagagtttctgtagctaatttctttggaaatctttatgatttggatgaatcttcgtcaaaggttta 26397680  T
Q  458 tggtcctattaaagaattgatctcagaagagaacccaccaatctatagagatattagcttagcagaatacatgtcacaccatttgacaaaggggcttgat 557  Q
     |||||||| ||  ||||| | |||||||| | |||||| ||||| ||||| |  ||||| | ||||| |||| ||||  || |||  |||||   ||||    
T  26397681 cggtcctataaagaaattgttatcagaagaaatcccaccgatctacagagaaaccagctttgaagaattcatggcacattatctgaagaagggatatgat 26397780  T
Q  558 gggaactctgcattgcacccttttaggttgtaaaaggaacatatttcaactcaaaaa 614  Q
    |||| |   || ||||| ||||||| |||||||||  || ||||||||||| |||||    
T  26397781 gggagcaaagccttgcaaccttttacgttgtaaaaataatatatttcaactaaaaaa 26397837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 1908264 - 1908220
Alignment:
Q  66 attgagctcaagtagttaacgagtttcatcaatgacgaattgttt 110  Q
    ||||||||||||| ||||||||  ||||||||||| |||||||||    
T  1908264 attgagctcaagtggttaacgaacttcatcaatgatgaattgttt 1908220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 664
Target Start/End: Original strand, 8352537 - 8353196
Alignment:
Q  16 atataaataaacaattcaa-tccatataaaatgagctgaattaactaagtaattgagctcaagtagttaacgagtttcatcaatgacgaattgtttcgca 114  Q
    ||||||| ||||||||||| |||||||   ||||||||||||||   ||||||||||||||||  ||||||||| |||  ||||||| |||||||||  |    
T  8352537 atataaacaaacaattcaaatccatattctatgagctgaattaatatagtaattgagctcaagaggttaacgagcttctccaatgacaaattgtttcaga 8352636  T
Q  115 aaacctcaccttgattcttgatggaacaatttttagtcaaactttacttacctctgaccaaactttgaaataccgggttccccnnnnnnnagagctagag 214  Q
     ||||| || || |||||||||||||||||||| ||| | |||||| ||||||||||||||||| ||||||||| || |||         ||||||||||    
T  8352637 gaacctgactttaattcttgatggaacaattttcagttagactttatttacctctgaccaaactctgaaataccagggtcctttttctttagagctagag 8352736  T
Q  215 ggttnnnnnnnn-------cctgaattttggagaaaa-ttgaaattactatcatacttcatagttaattagatatcattgtaacgactatatacttatat 306  Q
    | ||               ||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  8352737 gattaacacaaaaaaaaaccctaaattttggagaaaaattgaaattactgtcagacttcatagttaattagataacattgtaacgactatatacttatat 8352836  T
Q  307 caatttatttgttaatcgtgcagcttgtgtcaaatgacaatttcagtagtgtttatcatcgggtactatcaaatcataaaggcccaagagtttctgtagc 406  Q
    ||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  8352837 caatttatttgttaatcatacagcttgtatcaaatgacaatttcagtagtgtttatcatcgtgtgttatcaaatcataaaggcccaagagtttctgtagc 8352936  T
Q  407 tgccttctttggaacttctcatgatcttgataaagcttcatcaatgatttatggtcctattaaagaattgatctcagaagagaacccaccaatctataga 506  Q
    |||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||||| |    
T  8352937 tgccttctttggaacttcccatgatctagataaagcttcatcaaagatttatggtcctattaaagatttgttctcagaagagaaccccccaatctataca 8353036  T
Q  507 gatattagcttagcagaatacatgtcacaccatttgacaaaggggcttgatgggaactctgcattgcacccttttaggttgtaaaaggaacatatttcaa 606  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||    
T  8353037 gatattagcttagcagaatacatgtcacaccacttgacaaaggggcttgatgggaactctgcattgcaaccttttaagttgtaaaaagaacacatttcaa 8353136  T
Q  607 ctcaaaaataaacttaataagttgatactcttctg--ttgagtgtaaggttgtggttttt 664  Q
    ||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  8353137 ctccaaaataaacttaataagttgatactcttctgttttgagtgtaaggttgtggttttt 8353196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 513
Target Start/End: Original strand, 41242340 - 41242399
Alignment:
Q  454 tttatggtcctattaaagaattgatctcagaagagaacccaccaatctatagagatatta 513  Q
    |||||||||| || || |||||| | |||||||| ||||| |||||||||||||||||||    
T  41242340 tttatggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatatta 41242399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 21074804 - 21074751
Alignment:
Q  56 taactaagtaattgagctcaagtagttaacgagtttcatcaatgacgaattgtt 109  Q
    |||||||  |||||||||||| ||||||||||| ||| ||||||| ||||||||    
T  21074804 taactaaacaattgagctcaattagttaacgaggttcgtcaatgaagaattgtt 21074751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 49463266 - 49463218
Alignment:
Q  454 tttatggtcctattaaagaattgatctcagaagagaacccaccaatcta 502  Q
    |||||||||||||||| ||| || | |||||||| ||||||||||||||    
T  49463266 tttatggtcctattaaggaactgctttcagaagaaaacccaccaatcta 49463218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 513
Target Start/End: Original strand, 28130721 - 28130780
Alignment:
Q  454 tttatggtcctattaaagaattgatctcagaagagaacccaccaatctatagagatatta 513  Q
    |||||||||| || || |||||| | |||||||| ||||| |||||||||||||||||||    
T  28130721 tttatggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatatta 28130780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 8509654 - 8509692
Alignment:
Q  72 ctcaagtagttaacgagtttcatcaatgacgaattgttt 110  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  8509654 ctcaagtagttaatgagtttcatcaatgatgaattgttt 8509692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 5843640 - 5843673
Alignment:
Q  136 tggaacaatttttagtcaaactttacttacctct 169  Q
    ||||||||||||| ||||||||||||||||||||    
T  5843640 tggaacaattttttgtcaaactttacttacctct 5843673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 13043553 - 13043504
Alignment:
Q  56 taactaagtaattgagctcaagtagttaacgagtttcatcaatgacgaat 105  Q
    |||| ||| |||||||||||||| ||||| |||||||||||| |||||||    
T  13043553 taaccaagcaattgagctcaagtggttaatgagtttcatcaaggacgaat 13043504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 445 - 513
Target Start/End: Original strand, 29464909 - 29464977
Alignment:
Q  445 catcaatgatttatggtcctattaaagaattgatctcagaagagaacccaccaatctatagagatatta 513  Q
    |||||| |||||||||||||||||| ||  |||| |||||||| |||||  ||||||| | ||||||||    
T  29464909 catcaaagatttatggtcctattaaggagctgatttcagaagaaaacccggcaatctacaaagatatta 29464977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 34605380 - 34605344
Alignment:
Q  73 tcaagtagttaacgagtttcatcaatgacgaattgtt 109  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  34605380 tcaagtagttaacgaatttcatcaacgacgaattgtt 34605344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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