View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21366_low_4 (Length: 622)
Name: NF21366_low_4
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21366_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Original strand, 8819409 - 8820017
Alignment:
| Q |
1 |
aaaccaaaaatcgaacttaaccgaatagaagaagaaaaaa---gtgaatgagagttcatgacggttcaatttggatcggttcaattagtgaactatccgt |
97 |
Q |
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| T |
8819409 |
aaaccaaaaattgaacttaaccgaatagaagaagaaaaaaactgtgaatgagagttcatgaaggttcaatttggatcggttcaattagtgaactatccgt |
8819508 |
T |
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| Q |
98 |
cacagtttggnnnnnnnnnctt---tctaaacagttctaatataaaatcttgttttctttttcaactgtcctaattatatgttaataaaagcaattcaat |
194 |
Q |
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| T |
8819509 |
cacagtttggtttttttttcttctttctaaacagttctaatataaaaacttgttttctttttcaactgtcctaattatatgttaataaaagcaattcaat |
8819608 |
T |
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| Q |
195 |
acagtttgaattgaaaaagtaaagttcaattttttgtaaaagtcgttttagttgggttcagaactatagaatccatgcacaaaacctttaacataatttc |
294 |
Q |
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| T |
8819609 |
acagtttgaattgaaaaagtaaagttcaattttttgtaaaagtcgttttagttgggttcagaactatagaatccatgcacaaagcctttaacataatttc |
8819708 |
T |
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| Q |
295 |
ggttcagttttatcaactcttatatgggaattgaacaaacagcagtgactagggagcaaacctgatgtagtattcagagagtgatccagaaagaatgcgt |
394 |
Q |
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| T |
8819709 |
ggttcagttttatcaactcttatatgggaattgaacaaacagcagtgactagggagcaaacctgatgtagtattcagagagtgatccagaaagaatgcgt |
8819808 |
T |
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| Q |
395 |
ccaaagaaaccccaaatgcttatgaatgaaatgaacaaagaaacatcatggtaaccaagtgcctgtcccatttgtcccatgttattcatcacacatagtc |
494 |
Q |
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| T |
8819809 |
ccaaagaaaccccaaatgcttatgaatgaaatgaacaaagaaacatcatggtaaccaagtgcctgtcccatttgtcccaagttattcatcacacatagtc |
8819908 |
T |
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| Q |
495 |
ctgttcccacaccacatagaaatgatacaaacaaaacccaaaaatcaatagttttaaccatttcaatgattgtatgctcttcacctatcaccggttttct |
594 |
Q |
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| T |
8819909 |
ctgttcccacaccacatagaaatgatacaaacaaaacccaaaaatcaatagttttaaccatttcaatgattgtatgctcttcacctatcaccggttttct |
8820008 |
T |
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| Q |
595 |
tttaatctc |
603 |
Q |
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| T |
8820009 |
tttaatctc |
8820017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 315 - 456
Target Start/End: Original strand, 8818377 - 8818518
Alignment:
| Q |
315 |
tatatgggaattgaacaaacagcagtgactagggagcaaacctgatgtagtattcagagagtgatccagaaagaatgcgtccaaagaaaccccaaatgct |
414 |
Q |
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| T |
8818377 |
tatatgagaattgaagaaacagtagtgactagtgagtaaacctgatgtagtattcgaagagcggaccagaaagaatgcgcccaaagaaatcccaaatgct |
8818476 |
T |
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| Q |
415 |
tatgaatgaaatgaacaaagaaacatcatggtaaccaagtgc |
456 |
Q |
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| T |
8818477 |
aatcaaagaaatgaacaaagaaacaccatggtaaccaagtgc |
8818518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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