View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21366_low_5 (Length: 606)
Name: NF21366_low_5
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21366_low_5 |
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| [»] scaffold0209 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 342 - 587
Target Start/End: Original strand, 32282926 - 32283171
Alignment:
| Q |
342 |
aattcggactcggcatgttaaagttcattaatactccacaagtgttttatagactcttcgtaaattcaacatcatttgaattcttagatgttccaaggta |
441 |
Q |
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| T |
32282926 |
aattcggactcggcatgttaaagttcattaatactccacaagtgttttatagactcttcgtaaattcaacatcatttgaattcttagatgttccaaggta |
32283025 |
T |
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| Q |
442 |
aaaatcctccaacggaaccttcaaggggtaaaccacggtcaatgtttatgtacttgaaattggttaaagaattctcacatgaaaaataacataaatgtag |
541 |
Q |
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| T |
32283026 |
aaaatcctccaacggaaccttcaaggggtgaaccacggtcaatg-ttatgtacttgaaattggtcaaagaattctcacatgaaaaataacataaatgtag |
32283124 |
T |
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| Q |
542 |
ttacaactgttcaaggttaaatgtca-ttttgttgggaccacggttc |
587 |
Q |
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| T |
32283125 |
ttacaacattacaaggttaaatgtcatttttgttgggaccacggttc |
32283171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 32282612 - 32282706
Alignment:
| Q |
17 |
agcacagaagattatgcatgttaagatctgaagttcgattttctttggtgtcaatttcaatggacaagtccatataaattggatgctgagttttc |
111 |
Q |
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| T |
32282612 |
agcacagaagattatgcatgttacgatccgaggttcgattccctttgttgtcaattttagtgggcaagtccatataaattggatgctgagttttc |
32282706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 30207 - 30249
Alignment:
| Q |
50 |
ttcgattttctttggtgtcaatttcaatggacaagtccatata |
92 |
Q |
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| T |
30207 |
ttcgatttcttttgatgtcaatttcaatggacaagtccatata |
30249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 589152 - 589110
Alignment:
| Q |
50 |
ttcgattttctttggtgtcaatttcaatggacaagtccatata |
92 |
Q |
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| T |
589152 |
ttcgatttcttttgatgtcaatttcaatggacaagtccatata |
589110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 624770 - 624812
Alignment:
| Q |
50 |
ttcgattttctttggtgtcaatttcaatggacaagtccatata |
92 |
Q |
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| T |
624770 |
ttcgatttcttttgatgtcaatttcaatggacaagtccatata |
624812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 26535104 - 26535137
Alignment:
| Q |
57 |
ttctttggtgtcaatttcaatggacaagtccata |
90 |
Q |
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| T |
26535104 |
ttctttggtgtcaatttcagtggacaagtccata |
26535137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 470
Target Start/End: Complemental strand, 36879156 - 36879108
Alignment:
| Q |
422 |
ttcttagatgttccaaggtaaaaatcctccaacggaaccttcaaggggt |
470 |
Q |
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| T |
36879156 |
ttcttagatgtcccaaggtaaagatcctccaaagataccttcaaggggt |
36879108 |
T |
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