View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21366_low_9 (Length: 564)

Name: NF21366_low_9
Description: NF21366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21366_low_9
NF21366_low_9
[»] chr3 (15 HSPs)
chr3 (22-551)||(6788903-6789431)
chr3 (324-550)||(6558093-6558316)
chr3 (104-260)||(6558639-6558797)
chr3 (395-551)||(6526849-6527000)
chr3 (395-551)||(6848429-6848581)
chr3 (348-405)||(6549630-6549687)
chr3 (153-237)||(6938658-6938742)
chr3 (156-264)||(6527369-6527474)
chr3 (156-264)||(6848950-6849055)
chr3 (352-402)||(6939130-6939180)
chr3 (401-531)||(6939225-6939359)
chr3 (101-146)||(6785575-6785620)
chr3 (324-393)||(8466372-8466441)
chr3 (349-402)||(6943498-6943551)
chr3 (284-320)||(6796478-6796514)
[»] scaffold0425 (2 HSPs)
scaffold0425 (395-551)||(11556-11707)
scaffold0425 (156-264)||(12055-12160)
[»] chr1 (2 HSPs)
chr1 (399-435)||(17793259-17793295)
chr1 (206-246)||(7982062-7982102)


Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 22 - 551
Target Start/End: Complemental strand, 6789431 - 6788903
Alignment:
Q  22 actcataaacatctgacattatgaattcttcatatattcatgaaatgatgaaattctgatatggaataattaaattacacaatgattaatatatgagctt 121  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6789431 actcataaacatctgacactatgaatttttcatatattcatgaaatgatgaaattctgatatg-aataattaaattacacaatgattaatatatgagctt 6789333  T
Q  122 atcctacactcattagagttaacatttcactaatgaactgttgtggctttttgatcagcacagcagaaccctctagtgatatagatagataaaaatattc 221  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6789332 atcctatactcattagagttaacatt-cactaatgaactgttgtggctttttgatcagcacagcagaaccctctagtgatataaatagataaaaatattc 6789234  T
Q  222 acaaactgagagaaagcaatgaattaaaatcagaagtactgcactgataaaaacattcaaatgaagaaaatattgagccacctgcgaaattgtatagcat 321  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789233 acaaactgagagaaattaatgaattaaaatcagaagtactgcactgataaaaacattcaaatgaagaaaatattgagccacctgcgaaattgtatagcat 6789134  T
Q  322 gtaacatgtttgaatcggaagtttcaaaccaattttgcatgtagactgtgatccaaacaccatggaagctcctatccaccaaaattccctttaacaacaa 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789133 gtaacatgtttgaatcggaagtttcaaaccaattttgcatgtagactgtgatccaaacaccatggaagctcctatccaccaaaattccctttaacaacaa 6789034  T
Q  422 agtggcatgtcattcaattttttacgactttttcttaacaattaaaaagagaaataaaacgaaaatcgcagaaaaggctacatgacgtcctcactatgta 521  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789033 agtggcatgtcattcaattttttatgacttcttcttaacaattaaaaagagaaataaaacgaaaatcgcagaaaaggctacatgacgtcctcactatgta 6788934  T
Q  522 attgtttgattcaagtaattc-attggcttc 551  Q
    ||||||||||||||||||||| |||||||||    
T  6788933 attgtttgattcaagtaattcaattggcttc 6788903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 324 - 550
Target Start/End: Complemental strand, 6558316 - 6558093
Alignment:
Q  324 aacatgtttgaatcggaagtttcaaaccaattttgcatgtagactgtgatccaaacaccatggaagctcctatccacca--aaattccctttaacaacaa 421  Q
    |||||||||| ||| |||||| |||||||||||  || |||||||||| ||||||||||||||||||||| || |||||   |||||||||| |||||||    
T  6558316 aacatgtttggatccgaagttccaaaccaatttatcacgtagactgtgttccaaacaccatggaagctcccattcaccatgtaattccctttgacaacaa 6558217  T
Q  422 agtggcatgtcattcaattttttacgactttttcttaacaattaaaaagagaaataaaacgaaaatcgcag-aaaaggctacatgacgtcctcactatgt 520  Q
     |||||||||||||||||||||||      |  ||||||||||||||| | |||||||| ||||||| | | ||||||| ||||||| ||||||| ||||    
T  6558216 ggtggcatgtcattcaatttttta------tcacttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggccacatgacatcctcaccatgt 6558123  T
Q  521 aattgtttgattcaagtaattcattggctt 550  Q
    ||||  ||||| |||||||||||| |||||    
T  6558122 aatttgttgatgcaagtaattcatcggctt 6558093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 104 - 260
Target Start/End: Complemental strand, 6558797 - 6558639
Alignment:
Q  104 tgattaatatatgagcttatcctacactcattagagttaacatttcactaatgaactgttgtggctttttgatcagcacagcagaaccctcta---gtga 200  Q
    ||||||||||||||||||||||||||| || | ||||||||||  |||||||||||  ||||||||||||||||||||||| |||||| ||||   ||||    
T  6558797 tgattaatatatgagcttatcctacacccactggagttaacata-cactaatgaaccattgtggctttttgatcagcacaggagaaccttctactagtga 6558699  T
Q  201 tatagatagataaaaatattcacaaactgagagaaagcaatgaattaaaatcagaagtac 260  Q
    ||||||||||||||  |||||||||||||||| |||| | ||||||| ||||||||||||    
T  6558698 tatagatagataaacctattcacaaactgagaaaaagtattgaattacaatcagaagtac 6558639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 395 - 551
Target Start/End: Complemental strand, 6527000 - 6526849
Alignment:
Q  395 atccaccaaaattccctttaacaacaaagtggcatgtcattcaattttttacgactttttcttaacaattaaaaagagaaataaaacgaaaatcgcag-a 493  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||      |  ||||||||||||||| | |||||||| ||||||| | | |    
T  6527000 atccaccaaaattcccttaaacaacaaagtggcatgtcattcaatttttta------tcacttaacaattaaaaatataaataaaatgaaaatcacggta 6526907  T
Q  494 aaaggctacatgacgtcctcactatgtaattgtttgattcaagtaattcattggcttc 551  Q
    |||||| ||||||| ||||||| ||||||||| ||||| ||| |||||||| ||||||    
T  6526906 aaaggccacatgacatcctcaccatgtaattggttgatgcaattaattcatcggcttc 6526849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 395 - 551
Target Start/End: Complemental strand, 6848581 - 6848429
Alignment:
Q  395 atccaccaaaattccctttaacaacaaagtggcatgtcattcaattttttacgactttttcttaacaattaaaaagagaaataaaacgaaaatcgcag-a 493  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||     | |  ||||||||||||||| | |||||||| ||||||| | | |    
T  6848581 atccaccaaaattcccttaaacaacaaagtggcatgtcattcaatttttt-----tatcacttaacaattaaaaatataaataaaatgaaaatcacggta 6848487  T
Q  494 aaaggctacatgacgtcctcactatgtaattgtttgattcaagtaattcattggcttc 551  Q
    |||||| ||||| | ||||||| ||||||||| ||||| ||| |||||||| ||||||    
T  6848486 aaaggccacatggcatcctcaccatgtaattggttgatgcaattaattcatcggcttc 6848429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 6549687 - 6549630
Alignment:
Q  348 aaccaattttgcatgtagactgtgatccaaacaccatggaagctcctatccaccaaaa 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6549687 aaccaattttgcatgtagactgtgatccaaacaccatggaagctcccatccaccaaaa 6549630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 6938658 - 6938742
Alignment:
Q  153 aatgaactgttgtggctttttgatcagcacagcagaaccctctagtgatatagatagataaaaatattcacaaactgagagaaag 237  Q
    ||||||||||||||||||||||||||||||||||||||| |||| | ||  |||||||||||  |||||||||||||||| ||||    
T  6938658 aatgaactgttgtggctttttgatcagcacagcagaaccttctaattatgcagatagataaacttattcacaaactgagaaaaag 6938742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 6527474 - 6527369
Alignment:
Q  156 gaactgttgtggctttttgatcagcacagcagaaccctctagtgatatagatagataaaaatattcacaaactgagagaaagcaatgaattaaaatcaga 255  Q
    ||||||||||||||||||||   |||||| |||||| |||| ||||  ||| |||||||  |||||||||||||||| |||| ||||||||| |||||||    
T  6527474 gaactgttgtggctttttga---gcacagaagaaccttctaatgatgcagaaagataaacttattcacaaactgagaaaaagtaatgaattacaatcaga 6527378  T
Q  256 agtactgca 264  Q
    |||||||||    
T  6527377 agtactgca 6527369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 6849055 - 6848950
Alignment:
Q  156 gaactgttgtggctttttgatcagcacagcagaaccctctagtgatatagatagataaaaatattcacaaactgagagaaagcaatgaattaaaatcaga 255  Q
    ||||||||||||||||||||   |||||| |||||| |||| ||||  ||| |||||||  |||||||||||||||| |||| ||||||||| |||||||    
T  6849055 gaactgttgtggctttttga---gcacagaagaaccttctaatgatgcagaaagataaacttattcacaaactgagaaaaagtaatgaattacaatcaga 6848959  T
Q  256 agtactgca 264  Q
    |||||||||    
T  6848958 agtactgca 6848950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 402
Target Start/End: Original strand, 6939130 - 6939180
Alignment:
Q  352 aattttgcatgtagactgtgatccaaacaccatggaagctcctatccacca 402  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  6939130 aattttgcatgtagactgtgatccaaacaccatggaagctcccacccacca 6939180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 531
Target Start/End: Original strand, 6939225 - 6939359
Alignment:
Q  401 caaaattccctttaacaacaaagtggca---tgtcattcaattttttacgactttttcttaacaattaaaaagagaaataaaacgaaaatcgcag-aaaa 496  Q
    ||||||||| ||| | ||||||||||||   ||||||||||||||| |  |||| ||||||||| ||||||| |||||||||| |||||  | || ||||    
T  6939225 caaaattccatttgaaaacaaagtggcagcatgtcattcaatttttgatcacttcttcttaacacttaaaaaaagaaataaaatgaaaactggagtaaaa 6939324  T
Q  497 ggctacatgacgtcctcactatgtaattgtttgat 531  Q
    ||| ||||||| |||||||  |||||||| |||||    
T  6939325 ggccacatgacatcctcaccgtgtaattgattgat 6939359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 6785620 - 6785575
Alignment:
Q  101 caatgattaatatatgagcttatcctacactcattagagttaacat 146  Q
    |||||||||||||||||||||||||||||||| || ||||||||||    
T  6785620 caatgattaatatatgagcttatcctacactctttggagttaacat 6785575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 393
Target Start/End: Original strand, 8466372 - 8466441
Alignment:
Q  324 aacatgtttgaatcggaagtttcaaaccaattttgcatgtagactgtgatccaaacaccatggaagctcc 393  Q
    |||| ||||||||  |||||| ||||||||||||  | |||||||||||||||||| |||||||||||||    
T  8466372 aacaagtttgaattagaagttccaaaccaattttttacgtagactgtgatccaaaccccatggaagctcc 8466441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 6943498 - 6943551
Alignment:
Q  349 accaattttgcatgtagactgtgatccaaacaccatggaagctcctatccacca 402  Q
    |||||||||| | ||||||||||||||||||| ||| ||||||||  |||||||    
T  6943498 accaattttgtacgtagactgtgatccaaacatcatcgaagctcccgtccacca 6943551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 6796514 - 6796478
Alignment:
Q  284 gaagaaaatattgagccacctgcgaaattgtatagca 320  Q
    |||||||||||  ||||||||||||||||||||||||    
T  6796514 gaagaaaatatcaagccacctgcgaaattgtatagca 6796478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 395 - 551
Target Start/End: Complemental strand, 11707 - 11556
Alignment:
Q  395 atccaccaaaattccctttaacaacaaagtggcatgtcattcaattttttacgactttttcttaacaattaaaaagagaaataaaacgaaaatcgcag-a 493  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||      |  ||||||||||||||| |  ||||||| ||||||| | | |    
T  11707 atccaccaaaattcccttaaacaacaaagtggcatgtcattcaatttttta------tcacttaacaattaaaaatattaataaaatgaaaatcacggta 11614  T
Q  494 aaaggctacatgacgtcctcactatgtaattgtttgattcaagtaattcattggcttc 551  Q
    |||||| ||||||| ||||||| ||||||||| ||||| ||| |||||||| ||||||    
T  11613 aaaggccacatgacatcctcaccatgtaattggttgatgcaattaattcatcggcttc 11556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 12160 - 12055
Alignment:
Q  156 gaactgttgtggctttttgatcagcacagcagaaccctctagtgatatagatagataaaaatattcacaaactgagagaaagcaatgaattaaaatcaga 255  Q
    ||||||||||||||||||||   |||||| |||||| |||| ||||  ||| |||||||  |||||||||||||||| |||| ||||||||| |||||||    
T  12160 gaactgttgtggctttttga---gcacagaagaaccttctaatgatgcagaaagataaacttattcacaaactgagaaaaagtaatgaattacaatcaga 12064  T
Q  256 agtactgca 264  Q
    |||||||||    
T  12063 agtactgca 12055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 17793259 - 17793295
Alignment:
Q  399 accaaaattccctttaacaacaaagtggcatgtcatt 435  Q
    |||||||||||||||||||||||||||| ||||||||    
T  17793259 accaaaattccctttaacaacaaagtggtatgtcatt 17793295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 7982102 - 7982062
Alignment:
Q  206 atagataaaaatattcacaaactgagagaaagcaatgaatt 246  Q
    ||||||||| ||||||||||||||||| |||| ||||||||    
T  7982102 atagataaacatattcacaaactgagaaaaagtaatgaatt 7982062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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