View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21367_high_1 (Length: 703)

Name: NF21367_high_1
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21367_high_1
NF21367_high_1
[»] chr8 (1 HSPs)
chr8 (19-469)||(6524235-6524681)
[»] chr1 (2 HSPs)
chr1 (494-588)||(29321939-29322032)
chr1 (546-588)||(14106850-14106892)
[»] chr5 (1 HSPs)
chr5 (494-588)||(22362729-22362823)
[»] chr4 (2 HSPs)
chr4 (494-588)||(1493978-1494072)
chr4 (494-551)||(12105402-12105459)
[»] chr2 (2 HSPs)
chr2 (494-588)||(17641381-17641475)
chr2 (494-588)||(27008429-27008523)


Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 6524235 - 6524681
Alignment:
Q  19 attcaagccaaaattcagtggaggccaaggttttagaactatgcgcagttttaatgaagctttgttagctaagcaagtctggagattaattaaataccct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6524235 attcaagccaaaattcagtggaggccaaggttttagaactatgcgcagttttaatgaagctttgttagcaaagcaagtctggagattaattaaataccct 6524334  T
Q  119 acaatctacatccttcttagccacttgcctaaaagccaaacacttccccaatacagatgttttaaaagctaaattgggtaatcaacctagttttgtttgg 218  Q
    ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6524335 ac-------atccttcttagccacttgcctaaaagccaaacacttccccaatacagatgttttaaaagctaaattgggtaatcaacctagttttgtttgg 6524427  T
Q  219 agcagtatctaccacacaaattggattatcaaaaaagggggttgctcgttaattggagatggcaaaaagatagatgtgtgggatgataactggctacctc 318  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6524428 agcagtatctaccacacaaagtggattatcaaaaaagggggtcgctggttaattggagatggcaaaaagatagatgtgtgggatgataactggctacctc 6524527  T
Q  319 atcagaatggattcaaaactgtctctaaggcaaccaataacactgatataagaattgtgaaagacctcatggtggagggcc-aaaaaagatggcagcaga 417  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6524528 atcagaatggattcaaaactgtctctaagccaaccaataacattgatatcagaattgtgaaagacctcatggtggagggccaaaaaaagatggcagcaga 6524627  T
Q  418 acttactt--gacaataacttctacaggtttgaagctgtagaagtttgtgacca 469  Q
    ||||||||   | |||||||||||||||||||||||||||||||||||||||||    
T  6524628 acttacttacaataataacttctacaggtttgaagctgtagaagtttgtgacca 6524681  T

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Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 494 - 588
Target Start/End: Original strand, 29321939 - 29322032
Alignment:
Q  494 ggaaaaagatacatagaccaccccttctatacacccttttctaccactgcttatgtggtatgagcatttcagtaatttcacacattttataattt 588  Q
    ||||||||||||| | ||||| | |||||||||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||    
T  29321939 ggaaaaagatacacaaaccactctttctatacacccctttctaccactgctgatgtggtatgggcattt-agtaatttcacacattttataattt 29322032  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 546 - 588
Target Start/End: Complemental strand, 14106892 - 14106850
Alignment:
Q  546 atgtggtatgagcatttcagtaatttcacacattttataattt 588  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  14106892 atgtggtatgggcattttagtaatttcacacattttataattt 14106850  T

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Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 494 - 588
Target Start/End: Original strand, 22362729 - 22362823
Alignment:
Q  494 ggaaaaagatacatagaccaccccttctatacacccttttctaccactgcttatgtggtatgagcatttcagtaatttcacacattttataattt 588  Q
    ||||||||||||||||||||| | ||||||||||| |||| |||||||  | |||||||||| ||||||  ||||||||||||||||||||||||    
T  22362729 ggaaaaagatacatagaccactctttctatacaccattttgtaccactaatgatgtggtatgggcattttcgtaatttcacacattttataattt 22362823  T

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Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 494 - 588
Target Start/End: Complemental strand, 1494072 - 1493978
Alignment:
Q  494 ggaaaaagatacatagaccaccccttctatacacccttttctaccactgcttatgtggtatgagcatttcagtaatttcacacattttataattt 588  Q
    ||||||||||||| | ||||| | |||||||||||||||| |||||||| | |||||||||| |||||| |||| ||||||||||||||||||||    
T  1494072 ggaaaaagatacacaaaccactctttctatacacccttttgtaccactgatgatgtggtatgggcattttagtagtttcacacattttataattt 1493978  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 12105459 - 12105402
Alignment:
Q  494 ggaaaaagatacatagaccaccccttctatacacccttttctaccactgcttatgtgg 551  Q
    ||||||||||||||||||||||| ||   ||||||||||| |||||||||| ||||||    
T  12105459 ggaaaaagatacatagaccacccttttggtacacccttttataccactgctgatgtgg 12105402  T

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Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 494 - 588
Target Start/End: Original strand, 17641381 - 17641475
Alignment:
Q  494 ggaaaaagatacatagaccaccccttctatacacccttttctaccactgcttatgtggtatgagcatttcagtaatttcacacattttataattt 588  Q
    ||||||||||||||||||||| | |||||||||||| |||  ||||||  | |||||||||| |||||| |||||||||||||||||||||||||    
T  17641381 ggaaaaagatacatagaccactctttctatacacccctttgcaccactaataatgtggtatgggcattttagtaatttcacacattttataattt 17641475  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 494 - 588
Target Start/End: Complemental strand, 27008523 - 27008429
Alignment:
Q  494 ggaaaaagatacatagaccaccccttctatacacccttttctaccactgcttatgtggtatgagcatttcagtaatttcacacattttataattt 588  Q
    ||||||||||||| | ||||| | |||||||||||||||| |||||||| | |||||||||| |||||| |||| ||||||||||||||||||||    
T  27008523 ggaaaaagatacacaaaccactctttctatacacccttttgtaccactgatgatgtggtatgggcattttagtagtttcacacattttataattt 27008429  T

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