View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21367_high_12 (Length: 295)
Name: NF21367_high_12
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21367_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 6445480 - 6445742
Alignment:
| Q |
21 |
agtcagaccatgatgatttagttccgttgaatttctaaggatctgtgaaccagaaaggtattatttgcaatagataatggcaaatgcaaacatgttcttg |
120 |
Q |
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| T |
6445480 |
agtcagaccatgatgatttagttccgttgaatttctaaggatctgtgacctagaagggtattatttgcaatagataatggcaaatgcaaacatgttcttg |
6445579 |
T |
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| Q |
121 |
ggaatcttggcaagtcacaatgttaatcgaactcaatnnnnnnnntaaaataaatcaacaatgatatatgtacctccaataattatctatatctattcaa |
220 |
Q |
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| T |
6445580 |
ggtatcttggcaagtcacaatgttaatcgaactcaat---aaaaataaaataaatcaacaatgatatatgtacctccaataattatctatatctattcaa |
6445676 |
T |
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| Q |
221 |
catttcannnnnnnnatcacattattaatttattacatccatcgcatcactcttttctattctttt |
286 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
6445677 |
catttcattttctttatcacattattaatttattacatctatcgcatcactcttttctatcctttt |
6445742 |
T |
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