View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21367_high_13 (Length: 276)
Name: NF21367_high_13
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21367_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 26744895 - 26745155
Alignment:
| Q |
1 |
cactcacacagtcgcatgcacaaatgcttacattgtttataggtataatttgcgtaagtaccataatcatatccataaaatttgacatggggtaagtgtt |
100 |
Q |
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| T |
26744895 |
cactcacacagtcgcatgcacaaatgcttacattgtttataggtataatttgcgtaagtaccataatcatatccataaaatttgacatggggtaagtgtt |
26744994 |
T |
|
| Q |
101 |
ggaagcgagtatttgaacttgtcttgttgtcacatgaaagttggaagcttggtttgcacccttggaaccagtcttgattatcaatcctgatataacctgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26744995 |
ggaagcgagtatttgaacttgtcttgttgtcacatgaaagttggaagcttggtttgcacccttggaaccagtcttgattatcgatcctgatataacctgg |
26745094 |
T |
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| Q |
201 |
aaggcacgaacactttctaccactacggaaattataactgcaaacgccattgggtccacaa |
261 |
Q |
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| T |
26745095 |
aaggcacgaacactttctaccactacggaaattataactgcaaacgccattgggtccacaa |
26745155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 26693961 - 26693747
Alignment:
| Q |
4 |
tcacacagtcgcatgcacaaatgcttacattgtttataggtataatttgcgtaagtacca-taatcatatccataaaatttgacatggggtaagtgttgg |
102 |
Q |
| |
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| T |
26693961 |
tcacacattcgcaagcagaactgcttacattgtttataggtgaaatttgcttg-gtgcaaataatcgtatccataaaaatcaacatggggtaagcgttgg |
26693863 |
T |
|
| Q |
103 |
aagcgagtatttgaacttgtcttgttgtcacatgaaagttggaagcttggtttgcacccttggaaccagtcttgattatcaatcctgatataacctggaa |
202 |
Q |
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| T |
26693862 |
aagcgagtctttgattctgttttgttgttgcatgaaagttggaagcttggtttacacccttgagaccaatcttgattattgatcctgttataaccaggaa |
26693763 |
T |
|
| Q |
203 |
ggcacgaacactttct |
218 |
Q |
| |
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| ||| ||||||||| |
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| T |
26693762 |
gacacacacactttct |
26693747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 26676299 - 26676499
Alignment:
| Q |
22 |
aaatgcttacattgtttataggtataatttgcgtaagtacc-ataatcatatccataaaatttgacatggggtaagtgttggaagcgagtatttgaactt |
120 |
Q |
| |
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|||||||||||||||||||| || |||||||| | | || |||||||||||||||||| | ||||||||||| |||||||| ||| | | | || |
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| T |
26676299 |
aaatgcttacattgtttataagtgtaatttgcttt-gaactgataatcatatccataaaactcaacatggggtaaacgttggaagtaagtctctaacttt |
26676397 |
T |
|
| Q |
121 |
gtcttgttgtcacatgaaagttggaagcttggtttgcacccttggaaccagtcttgattatcaatcctgatataacctggaaggcacgaacactttctac |
220 |
Q |
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|| ||||| | ||||||||||||||| ||||||||||||| || |||| | ||||||||| |||||| ||||||| |||| ||| |||||||||||| |
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| T |
26676398 |
gttttgttattgcatgaaagttggaagtttggtttgcacccctgagaccaattttgattatcgatcctgctataaccgggaacacacaaacactttctac |
26676497 |
T |
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| Q |
221 |
ca |
222 |
Q |
| |
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|| |
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| T |
26676498 |
ca |
26676499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 26714743 - 26714844
Alignment:
| Q |
120 |
tgtcttgttgtcacatgaaagttggaagcttggtttgcacccttggaaccagtcttgattatcaatcctgatataacctggaaggcacgaacactttcta |
219 |
Q |
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||||||||| | ||||||| |||||||||||||||||||||||| |||| ||||| |||| || || |||||||| |||| |||||||| |||||| |
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| T |
26714743 |
tgtcttgttattgcatgaaaattggaagcttggtttgcacccttgagaccaatcttggttattgattatgctataacctagaagacacgaacattttcta |
26714842 |
T |
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| Q |
220 |
cc |
221 |
Q |
| |
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|| |
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|
| T |
26714843 |
cc |
26714844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 26737995 - 26738080
Alignment:
| Q |
136 |
gaaagttggaagcttggtttgcacccttggaaccagtcttgattatcaatcctgatataacctggaaggcacgaacactttctacc |
221 |
Q |
| |
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|||| |||||||||||||||||||||||| |||| ||||| |||| || || ||||||||||||| |||||||| |||||||| |
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| T |
26737995 |
gaaaattggaagcttggtttgcacccttgagaccaatcttggttattgattatgctataacctggaagacacgaacattttctacc |
26738080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 26689680 - 26689632
Alignment:
| Q |
133 |
catgaaagttggaagcttggtttgcacccttggaaccagtcttgattat |
181 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
26689680 |
catgaaagttggaagcttggtttgcacccttgtgaccaatcttgattat |
26689632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 26699484 - 26699536
Alignment:
| Q |
4 |
tcacacagtcgcatgcacaaatgcttacattgtttataggtataatttgcgta |
56 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||||| |||||| |||| |
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| T |
26699484 |
tcacacaatcgcaaacacaaatgcttacattgtttataggtgtaattttcgta |
26699536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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