View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21367_high_6 (Length: 372)

Name: NF21367_high_6
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21367_high_6
NF21367_high_6
[»] chr1 (8 HSPs)
chr1 (20-372)||(51807688-51808034)
chr1 (178-366)||(51803887-51804075)
chr1 (207-326)||(51772294-51772413)
chr1 (20-83)||(51772107-51772170)
chr1 (207-326)||(51780160-51780279)
chr1 (20-71)||(51803802-51803853)
chr1 (205-308)||(51761302-51761406)
chr1 (20-70)||(51779992-51780046)
[»] scaffold0710 (2 HSPs)
scaffold0710 (207-326)||(6802-6921)
scaffold0710 (20-70)||(6634-6688)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 51807688 - 51808034
Alignment:
Q  20 gatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcctagatatatggtataatatacgaaaaccattttcca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51807688 gatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcctagatatatggtataatatacgaaaaccattttcca 51807787  T
Q  120 tttctgtgtagtatctatatcagcttaactcctcttgcagttgctagttgagttgcgcgtatctaattctatttgcataactctgaaaaatttcagtgag 219  Q
    |||||||||||||||||||||||||| |||||||||||      |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51807788 tttctgtgtagtatctatatcagctttactcctcttgc------tagttgagttgcgcatatctaattctatttgcataactctgaaaaatttcagtgag 51807881  T
Q  220 agttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtttacgcaatatttt 319  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51807882 agttggagcaaacatatctaaaacaataaagagaactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtttacgcaatatttt 51807981  T
Q  320 agtgtgacagaaggagagaggctatcaaaagtttcgcagtattatctacccac 372  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  51807982 agtgtgacagaaggagagaggctatcaaaagtttcacagtgttatctatccac 51808034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 178 - 366
Target Start/End: Original strand, 51803887 - 51804075
Alignment:
Q  178 gtatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaatt 277  Q
    |||||||||||| |||  |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  51803887 gtatctaattctctttatataactctgaaaaatttcagtgagatcgggagcaaacatatctaaaacaataaagaggacgttgaacttaggggctcaaatt 51803986  T
Q  278 cttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtattatct 366  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  51803987 cttcaaatgggtggagtggagaaaatgtttaggcagtattttagtgtgagagaaggagagaggctatcaaaagtttcgcagtgttatct 51804075  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 207 - 326
Target Start/End: Original strand, 51772294 - 51772413
Alignment:
Q  207 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt 306  Q
    |||||||||| ||| || |||||||||| ||| ||||||| ||||| |  ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51772294 aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtt 51772393  T
Q  307 tacgcaatattttagtgtga 326  Q
    || ||  |||||||||||||    
T  51772394 tatgcggtattttagtgtga 51772413  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 51772107 - 51772170
Alignment:
Q  20 gatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcc 83  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  51772107 gatagtctctcacaaaaagtccaagaacatggtgagtacccttgtaagactgagatgtgtttcc 51772170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 207 - 326
Target Start/End: Original strand, 51780160 - 51780279
Alignment:
Q  207 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt 306  Q
    |||||||| | ||| | ||||||||||| ||| ||||||||| |||||  ||||||||||||||| |||||||| || ||||||||||||| ||| | ||    
T  51780160 aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt 51780259  T
Q  307 tacgcaatattttagtgtga 326  Q
    || ||| |||||||||||||    
T  51780260 tatgcactattttagtgtga 51780279  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 51803802 - 51803853
Alignment:
Q  20 gatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagactt 71  Q
    |||||||||||||||||||| |||||||| |||||||||||| |||||||||    
T  51803802 gatagtctctcacaaagagttcaagaacatggtgagtaccctagtaagactt 51803853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 308
Target Start/End: Original strand, 51761302 - 51761406
Alignment:
Q  205 aaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagctta-ggggctcaaattcttcaaatgggtggagtggagaaagt 303  Q
    |||||||||||||||||| |||| |||||||||  |||||||||||||||  || ||   | ||||||| ||||||| || |||||| |||||||||| |    
T  51761302 aaaaatttcagtgagagtgggagaaaacatatcagaaacaataaagaggaagttaagtacagggggctcgaattcttgaagtgggtgaagtggagaaaat 51761401  T
Q  304 gttta 308  Q
    |||||    
T  51761402 gttta 51761406  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 51779992 - 51780046
Alignment:
Q  20 gatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact 70  Q
    |||||||||||||||| |||||||||||| |    ||||||||||||||||||||    
T  51779992 gatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact 51780046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 207 - 326
Target Start/End: Original strand, 6802 - 6921
Alignment:
Q  207 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt 306  Q
    |||||||| | ||| | ||||||||||| ||| ||||||||| |||||  ||||||||||||||| |||||||| || ||||||||||||| ||| | ||    
T  6802 aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt 6901  T
Q  307 tacgcaatattttagtgtga 326  Q
    || ||| |||||||||||||    
T  6902 tatgcactattttagtgtga 6921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 6634 - 6688
Alignment:
Q  20 gatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact 70  Q
    |||||||||||||||| |||||||||||| |    ||||||||||||||||||||    
T  6634 gatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact 6688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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