View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21367_high_8 (Length: 351)

Name: NF21367_high_8
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21367_high_8
NF21367_high_8
[»] chr6 (17 HSPs)
chr6 (131-331)||(8540092-8540293)
chr6 (131-311)||(8549074-8549254)
chr6 (131-333)||(8625059-8625257)
chr6 (67-133)||(8627683-8627749)
chr6 (131-331)||(8514747-8514943)
chr6 (135-320)||(8843391-8843573)
chr6 (171-331)||(8830126-8830283)
chr6 (131-254)||(5083097-5083220)
chr6 (141-254)||(8507396-8507509)
chr6 (168-279)||(8647109-8647220)
chr6 (210-331)||(8833836-8833954)
chr6 (1-38)||(8627766-8627803)
chr6 (131-254)||(8527619-8527742)
chr6 (131-254)||(8540747-8540870)
chr6 (67-104)||(8829715-8829752)
chr6 (100-133)||(5083105-5083138)
chr6 (67-104)||(8833427-8833464)
[»] scaffold0155 (1 HSPs)
scaffold0155 (171-254)||(34659-34742)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 131 - 331
Target Start/End: Complemental strand, 8540293 - 8540092
Alignment:
Q  131 atgaaatacgttcttgaatgtagtaatagtcttaaacaaaatgaaaccagtcctttacttttaaagtatgttgatcatcttcaacaaggtgttcaagttc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||| | |||||||  |||||||||||||||||||| |||||||||||||||||    
T  8540293 atgaaatacgttcttgaatgtagtaatagtcttaaacaaaatccaaccagccatttacttgcaaagtatgttgatcatcttcgacaaggtgttcaagttc 8540194  T
Q  231 ttcaaattataacaaaatatttaattgctggaaagtaatttagttttttct-agaaggggtaataaattgcattgtttcttatagttatttgatttatag 329  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| | ||||||||| ||||||||||||||||||||||||| ||    
T  8540193 ttcaaattataacaaaatatttaattgctggaaagtaaattagttttttttgagaagggatgataaattgccttgtttcttatagttatttgatttagag 8540094  T
Q  330 tt 331  Q
    ||    
T  8540093 tt 8540092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 131 - 311
Target Start/End: Original strand, 8549074 - 8549254
Alignment:
Q  131 atgaaatacgttcttgaatgtagtaatagtcttaaacaaaatgaaaccagtcctttacttttaaagtatgttgatcatcttcaacaaggtgttcaagttc 230  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  8549074 atgaaatacattcttgaatgtagtaatagtcttaaacaaaatgaaaccagtcctttacttgcaaagtatgttgatcatcttcaacaaggtgttcaagttc 8549173  T
Q  231 ttcaaattataacaaaatatttaattgctggaaagtaatttagttttttctagaaggggtaataaattgcattgtttctta 311  Q
    ||||||| |||||||||||||||||||||||||| |||||| ||||||   ||||||| ||||||||||||||||||||||    
T  8549174 ttcaaatcataacaaaatatttaattgctggaaaataattttgtttttatgagaagggataataaattgcattgtttctta 8549254  T

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Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 131 - 333
Target Start/End: Complemental strand, 8625257 - 8625059
Alignment:
Q  131 atgaaatacgttcttgaatgtagtaatagtcttaaacaaaatgaaaccagtcctttacttttaaagtatgttgatcatcttcaacaaggtgttcaagttc 230  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||||||||||    
T  8625257 atgaaatacattcttgaatgtagtaatagtcttaaacaaaatgaaaccagccctttacttgcaaagtatgttgatcatcttcgacaaggtgttcaagttc 8625158  T
Q  231 ttcaaattataacaaaatatttaattgctggaaagtaatttagttttttct-agaaggggtaataaattgcattgtttcttatagttatttgatttatag 329  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||| | ||||||| |||||| ||||||||||     ||||||||||||||| ||    
T  8625157 ttcaaattataacaaaatatttaattgctggaaagtaaattaattttttttgagaagggataataatttgcattgtt-----tagttatttgatttagag 8625063  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 8627749 - 8627683
Alignment:
Q  67 aaatgtataaatatttatcacttgtactacattatgtttatgaagactatcattacattcaagaatg 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8627749 aaatgtataaatatttatcacttgtactacattatgtttatgaagactatcattacattcaagaatg 8627683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 331
Target Start/End: Original strand, 8514747 - 8514943
Alignment:
Q  131 atgaaatacgttcttgaatgtagtaatagtcttaaacaaaatgaaaccagtcctttacttttaaagtatgttgatcatcttcaacaaggtgttcaagttc 230  Q
    ||||||||| |||||||||||| | |||||||  |  || |||||||||| ||||||||   ||||||||||||  | ||||||||||||| |||||||     
T  8514747 atgaaatacattcttgaatgtattgatagtctacatgaagatgaaaccagccctttactcgcaaagtatgttgaaaaccttcaacaaggtgctcaagttt 8514846  T
Q  231 ttcaaattataacaaaatatttaattgctggaaagtaatttagttttttctagaaggggtaataaattgcattgtttcttatagttatttgatttatagt 330  Q
    |||||||||||||||||||||||| |  |||||  ||| ||||| |||  |||||||| |||||| ||| ||||||||  |||||||||| ||||| |||    
T  8514847 ttcaaattataacaaaatatttaaatcttggaatataaattagtcttt--tagaagggataataatttggattgtttc--atagttatttcatttagagt 8514942  T

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Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 8843391 - 8843573
Alignment:
Q  135 aatacgttcttgaatgtagtaatagtcttaaacaaaatgaaaccagtcctttacttttaaagtatgttgatcatcttcaacaaggtgttcaagttcttca 234  Q
    ||||| ||||||| |||| | |||||||  || || ||||||||||  |||||||   ||||||||||||| |||||| |||||||| ||||||||||||    
T  8843391 aataccttcttgattgtattcatagtctgcaagaacatgaaaccagcactttactcgcaaagtatgttgatgatcttcgacaaggtgctcaagttcttca 8843490  T
Q  235 aattataacaaaatatttaattgctggaaagtaatttagttttttctagaaggggtaataaattgcattgtttcttatagttattt 320  Q
    ||||||| |||||||||||| |  |||||| ||| |||||| ||| |||||||| |||| | ||| ||||||||  ||||||||||    
T  8843491 aattatatcaaaatatttaaatcttggaaaataaattagttcttt-tagaagggataatgatttggattgtttc--atagttattt 8843573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 171 - 331
Target Start/End: Complemental strand, 8830283 - 8830126
Alignment:
Q  171 atgaaaccagtcctttacttttaaagtatgttgatcatcttcaacaaggtgttcaagttcttcaaattataacaaaatatttaattgctggaaagtaatt 270  Q
    |||| ||||| ||||||||   ||||||||||||  || |||||||||||| ||||||| |||||||||||||||||||||||| |  |||||| ||| |    
T  8830283 atgataccagccctttactcagaaagtatgttgaaaattttcaacaaggtgctcaagtttttcaaattataacaaaatatttaaatcttggaaattaaat 8830184  T
Q  271 tagttttttctagaaggggtaataaattgcattgtttcttatagttatttgatttatagtt 331  Q
    ||||| ||| |||||||| |||| | ||| ||||||||  |||||||||| ||||| ||||    
T  8830183 tagttcttt-tagaagggataatgatttggattgtttc--atagttatttcatttagagtt 8830126  T

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Target: chr6; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 5083097 - 5083220
Alignment:
Q  131 atgaaatacgttcttgaatgtagtaatagtcttaaacaaaatgaaaccagtcctttacttttaaagtatgttgatcatcttcaacaaggtgttcaagttc 230  Q
    ||||||||| |||||||||||| | |||||||| |  || |||||||||| ||||||||   ||||||||||||  |||| | |||||||| |||||||     
T  5083097 atgaaatacattcttgaatgtattgatagtcttcataaacatgaaaccagccctttactagcaaagtatgttgaaaatctacgacaaggtgctcaagttt 5083196  T
Q  231 ttcaaattataacaaaatatttaa 254  Q
    |||||||||| |||||||||||||    
T  5083197 ttcaaattatcacaaaatatttaa 5083220  T

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Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 8507509 - 8507396
Alignment:
Q  141 ttcttgaatgtagtaatagtcttaaacaaaatgaaaccagtcctttacttttaaagtatgttgatcatcttcaacaaggtgttcaagttcttcaaattat 240  Q
    ||||| |||||||  || |||||||| || |||||||||| |||||||||  |||| |||||||| |||||| ||||| || ||||||||||||||||||    
T  8507509 ttcttcaatgtagggatggtcttaaaaaagatgaaaccagccctttacttgcaaagaatgttgatgatcttcgacaagatgatcaagttcttcaaattat 8507410  T
Q  241 aacaaaatatttaa 254  Q
    |  |||||||||||    
T  8507409 actaaaatatttaa 8507396  T

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Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 279
Target Start/End: Complemental strand, 8647220 - 8647109
Alignment:
Q  168 aaaatgaaaccagtcctttacttttaaagtatgttgatcatcttcaacaaggtgttcaagttcttcaaattataacaaaatatttaattgctggaaagta 267  Q
    ||||| |||| || ||||||||   |||||||||||||  |||||||||||||  |||||||||||||||||||||||||||||||| |  || ||| ||    
T  8647220 aaaataaaactagccctttactcccaaagtatgttgatgttcttcaacaaggtaatcaagttcttcaaattataacaaaatatttaaatcttgaaaaata 8647121  T
Q  268 atttagtttttt 279  Q
    | ||||||||||    
T  8647120 acttagtttttt 8647109  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 331
Target Start/End: Complemental strand, 8833954 - 8833836
Alignment:
Q  210 ttcaacaaggtgttcaagttcttcaaattataacaaaatatttaattgctggaaagtaatttagttttttctagaaggggtaataaattgcattgtttct 309  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||| |  |||||| ||| ||| ||| || |||||||| |||| | ||| ||||||||     
T  8833954 ttcaacaaggtgctcaagtttttcaaattattacaaaatatttaaatcttggaaaataaatta-tttcttttagaagggataatgatttggattgtttc- 8833857  T
Q  310 tatagttatttgatttatagtt 331  Q
     |||||||||| ||||| ||||    
T  8833856 -atagttatttcatttagagtt 8833836  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8627766 - 8627803
Alignment:
Q  1 gattcgatctctaaccggtgtatatatatatggaaaaa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8627766 gattcgatctctaaccggtgtatatatatatggaaaaa 8627803  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 8527619 - 8527742
Alignment:
Q  131 atgaaatacgttcttgaatgtagtaatagtcttaaacaaaatgaaaccagtcctttacttttaaagtatgttgatcatcttcaacaaggtgttcaagttc 230  Q
    ||||||||| |||||||||||| | |||||||  |  || || ||||||| ||||||||   ||  ||||||||  |||||| |||| ||| |||||||     
T  8527619 atgaaatacattcttgaatgtattgatagtctacataaacataaaaccagccctttactcgcaacatatgttgaaaatcttcgacaaagtgctcaagttt 8527718  T
Q  231 ttcaaattataacaaaatatttaa 254  Q
    |||||||||| |||||||||||||    
T  8527719 ttcaaattatcacaaaatatttaa 8527742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 8540870 - 8540747
Alignment:
Q  131 atgaaatacgttcttgaatgtagtaatagtcttaaacaaaatgaaaccagtcctttacttttaaagtatgttgatcatcttcaacaaggtgttcaagttc 230  Q
    ||||||||| |||||||||||| | |||||||  |  || || ||||||| ||||||||   ||  ||||||||  |||||| |||| ||| |||||||     
T  8540870 atgaaatacattcttgaatgtattgatagtctacataaacataaaaccagccctttactcgcaacatatgttgaaaatcttcgacaaagtgctcaagttt 8540771  T
Q  231 ttcaaattataacaaaatatttaa 254  Q
    |||||||||| |||||||||||||    
T  8540770 ttcaaattatcacaaaatatttaa 8540747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 8829715 - 8829752
Alignment:
Q  67 aaatgtataaatatttatcacttgtactacattatgtt 104  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  8829715 aaatgtacaaatatttatcacttgtactacattatgtt 8829752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 5083138 - 5083105
Alignment:
Q  100 atgtttatgaagactatcattacattcaagaatg 133  Q
    ||||||||||||||||||| ||||||||||||||    
T  5083138 atgtttatgaagactatcaatacattcaagaatg 5083105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 8833427 - 8833464
Alignment:
Q  67 aaatgtataaatatttatcacttgtactacattatgtt 104  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  8833427 aaatgtacaaatatttatcacgtgtactacattatgtt 8833464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 34659 - 34742
Alignment:
Q  171 atgaaaccagtcctttacttttaaagtatgttgatcatcttcaacaaggtgttcaagttcttcaaattataacaaaatatttaa 254  Q
    |||||||||| ||||||||   ||| ||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||||    
T  34659 atgaaaccagccctttactcgcaaaatatgttgatgatcttcgacaaggtgatcaagttcttcaaattataataaaatatttaa 34742  T

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