View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21367_low_11 (Length: 342)

Name: NF21367_low_11
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21367_low_11
NF21367_low_11
[»] chr8 (6 HSPs)
chr8 (33-327)||(5368775-5369074)
chr8 (33-212)||(10188092-10188276)
chr8 (33-212)||(4140007-4140190)
chr8 (37-159)||(28844850-28844974)
chr8 (33-212)||(917194-917378)
chr8 (153-212)||(28844596-28844657)
[»] chr4 (8 HSPs)
chr4 (33-212)||(53828917-53829100)
chr4 (33-212)||(21804614-21804797)
chr4 (33-212)||(21631001-21631184)
chr4 (37-201)||(34735753-34735920)
chr4 (33-159)||(46094300-46094428)
chr4 (37-159)||(2503092-2503216)
chr4 (153-212)||(2503407-2503468)
chr4 (153-212)||(46093986-46094047)
[»] chr3 (4 HSPs)
chr3 (33-212)||(48268006-48268189)
chr3 (33-212)||(35872103-35872287)
chr3 (37-159)||(52351654-52351778)
chr3 (153-212)||(52351401-52351462)
[»] chr5 (3 HSPs)
chr5 (37-212)||(37300164-37300342)
chr5 (33-159)||(36993043-36993171)
chr5 (153-212)||(36992729-36992790)
[»] chr7 (8 HSPs)
chr7 (33-212)||(47232030-47232214)
chr7 (33-159)||(5766507-5766635)
chr7 (33-218)||(5433047-5433236)
chr7 (37-159)||(25417665-25417789)
chr7 (33-159)||(39065252-39065380)
chr7 (153-212)||(5766893-5766954)
chr7 (153-212)||(25417981-25418042)
chr7 (153-212)||(39065510-39065571)
[»] chr1 (6 HSPs)
chr1 (33-212)||(22910886-22911071)
chr1 (37-159)||(13788157-13788281)
chr1 (37-159)||(25805861-25805985)
chr1 (36-145)||(39625267-39625379)
chr1 (153-212)||(13787904-13787965)
chr1 (153-212)||(25806177-25806238)
[»] chr2 (6 HSPs)
chr2 (33-212)||(29457077-29457258)
chr2 (37-159)||(7572181-7572305)
chr2 (37-159)||(16666776-16666900)
chr2 (33-212)||(43565868-43566053)
chr2 (153-212)||(7572497-7572558)
chr2 (153-212)||(16667092-16667153)
[»] chr6 (3 HSPs)
chr6 (37-159)||(13431543-13431667)
chr6 (33-200)||(18884319-18884494)
chr6 (153-212)||(13431859-13431920)
[»] scaffold0516 (1 HSPs)
scaffold0516 (33-107)||(4195-4270)
[»] scaffold0084 (1 HSPs)
scaffold0084 (33-107)||(13427-13502)


Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 33 - 327
Target Start/End: Complemental strand, 5369074 - 5368775
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaaa-tgataatttataattttttcttgatttatattgtatttcaaat 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5369074 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaaaatgataatttataattttttcttgatttatattgtatttcaaat 5368975  T
Q  132 gattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacattcttttctcataacttataatatattaaaacagaacccaaactctatag 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5368974 gattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacattcttttctcataacttataatatattaaaacagaacccgaactctatag 5368875  T
Q  232 gattgatttcatgttctagagctatatatatggtgtgt----gtgtaacgacacacatgagtgaaactatattgattgtttcatatttcaaaaatattgt 327  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5368874 gattgatttcatgttctagagctatatatatggtgtgtgtgtgtgtaacgacacacatgagtgaaactatattgattgtttcatatttcaacaatattgt 5368775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 10188276 - 10188092
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttttt--cttgatttatattgtatttcaa 129  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || ||||||||||||  ||||||||| ||||||||||||    
T  10188276 atagttaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataattttttttcttgatttaaattgtatttcaa 10188177  T
Q  130 atgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat--tcttttctcataacttataatatattaaaa 212  Q
    || ||||||||||||||| | ||||||||| || ||| ||||||| |||||||  ||||||  ||||||||||||||||||||||    
T  10188176 ataattcaagtaaaaaataataatttatttaatatggctcctaatattcacatactctttttccataacttataatatattaaaa 10188092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 4140190 - 4140007
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttttt-cttgatttatattgtatttcaaa 130  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||| |||| || |||||||||||| ||||||||| |||||||||||||    
T  4140190 atagttaaagtttcatagtatttaatttaagtttaacaattagattgaagaaaaatatgacaacttataatttttttcttgatttaaattgtatttcaaa 4140091  T
Q  131 tgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat--tcttttctcataacttataatatattaaaa 212  Q
    | ||||||||||||||| | ||||||||| || ||||||||||| |||||||  ||||||  ||||||||||||||||||||||    
T  4140090 taattcaagtaaaaaataataatttatttaatatggttcctaatattcacatactctttttccataacttataatatattaaaa 4140007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 28844974 - 28844850
Alignment:
Q  37 gtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgat 134  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |    
T  28844974 gtaaagtttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggt 28844875  T
Q  135 tcaagtaaaaaattaaaatttattt 159  Q
    ||||||||||||| | |||||||||    
T  28844874 tcaagtaaaaaataataatttattt 28844850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 212
Target Start/End: Original strand, 917194 - 917378
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa--ttttttcttgatttatattgtatttcaa 129  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||| |||  || || |||  ||||||||||||||| ||||||||||||    
T  917194 ataggtaaaatttcatagtgtttaatttaagtttaacaattagatcgaagaaaaatatgtcaacttgtaattttttttcttgatttacattgtatttcaa 917293  T
Q  130 atgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataacttataatatattaaaa 212  Q
    ||| || |||||||||| ||| |||| ||| || | ||||||||| |||||  ||||||||| |||||| |||||||||||||||    
T  917294 atggttgaagtaaaaaaataatatttttttaatatagttcctaattttcacatattcttttcccataacctataatatattaaaa 917378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 28844657 - 28844596
Alignment:
Q  153 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 212  Q
    ||||||| || ||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  28844657 tttatttaatatggttcctaatcttcacacattcttttcccataacttataatatattaaaa 28844596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 212
Target Start/End: Original strand, 53828917 - 53829100
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttt-ttcttgatttatattgtatttcaaa 130  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||| ||||||||||| |||||||||||||    
T  53828917 ataggtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaa 53829016  T
Q  131 tgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataacttataatatattaaaa 212  Q
    || |||||||||||||| | ||||||||| || |||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  53829017 tggttcaagtaaaaaataataatttatttaatatggttcctaatcttcacatattcttttcccataacttataatatattaaaa 53829100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 21804797 - 21804614
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttttt-cttgatttatattgtatttcaaa 130  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||||| ||||||||| |||||||||| ||    
T  21804797 atagttaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttaaattgtatttcgaa 21804698  T
Q  131 tgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat--tcttttctcataacttataatatattaaaa 212  Q
    | ||||||||||||||| | ||||||||| || ||||||||||| |||||||  ||||||  ||||||||||||||||||||||    
T  21804697 taattcaagtaaaaaataataatttatttaatatggttcctaatattcacatactctttttccataacttataatatattaaaa 21804614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 212
Target Start/End: Original strand, 21631001 - 21631184
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttt-ttcttgatttatattgtatttcaaa 130  Q
    |||| |||||||||||||||||||||||| |||||||||||||| |||||||||| |||| || |||||||||| ||||||||||| |||||||||| ||    
T  21631001 atagttaaagtttcatagtgtttaatttaagtttaacaattagactggagaaaaatatgacaacttataatttttttcttgatttaaattgtatttcgaa 21631100  T
Q  131 tgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat--tcttttctcataacttataatatattaaaa 212  Q
    | ||||||||||||||| | ||||||||| || ||||||||||| |||||||  ||||||  ||||||||||||||||||||||    
T  21631101 taattcaagtaaaaaataataatttatttaatatggttcctaatattcacatactctttttccataacttataatatattaaaa 21631184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 34735753 - 34735920
Alignment:
Q  37 gtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgat 134  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||||||||| |||||| |||||||| |    
T  34735753 gtaaagtttcatagtttttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgta-ttcaaatggt 34735851  T
Q  135 tcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataacttata 201  Q
    | ||||||||||| ||||||||||| || || ||||||||||||||  ||||||||| |||||||||||    
T  34735852 tgaagtaaaaaataaaaatttatttaatatgattcctaatcttcacatattcttttcccataacttata 34735920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 46094428 - 46094300
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaa 130  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||||||||| |||||||||||||    
T  46094428 ataggtaaagtttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaa 46094329  T
Q  131 tgattcaagtaaaaaattaaaatttattt 159  Q
    || |||||||||||||| | |||||||||    
T  46094328 tggttcaagtaaaaaataataatttattt 46094300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 2503092 - 2503216
Alignment:
Q  37 gtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgat 134  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |    
T  2503092 gtaaagtttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggt 2503191  T
Q  135 tcaagtaaaaaattaaaatttattt 159  Q
    ||||||||||||| | |||||||||    
T  2503192 tcaagtaaaaaataataatttattt 2503216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 2503407 - 2503468
Alignment:
Q  153 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 212  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  2503407 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 2503468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 46094047 - 46093986
Alignment:
Q  153 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 212  Q
    ||||||| || ||||| ||||||||||||  |||||||| ||||||||||||||||||||||    
T  46094047 tttatttaatatggtttctaatcttcacacattcttttcccataacttataatatattaaaa 46093986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 48268189 - 48268006
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttttt-cttgatttatattgtatttcaaa 130  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| || |||||||||||| ||||||||| |||||||||||||    
T  48268189 ataggtaaagtttcatagtgtttaatttaagtttaacaattaaattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaa 48268090  T
Q  131 tgattcaagtaaaaaattaaaatttatttcatgtggttcctaatctt--cacattcttttctcataacttataatatattaaaa 212  Q
    || |||||||||||||| | ||||||||| |||||||||||||||||  |||||| ||||| ||||||||||||||||||||||    
T  48268089 tggttcaagtaaaaaataataatttatttaatgtggttcctaatcttcacacatttttttcccataacttataatatattaaaa 48268006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 35872287 - 35872103
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa--ttttttcttgatttatattgtatttcaa 129  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || ||||||  |||||||||||||||  |||||||||||    
T  35872287 ataggtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataattttttttcttgatttaccttgtatttcaa 35872188  T
Q  130 atgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataacttataatatattaaaa 212  Q
    ||| |||||||||||||| | ||||||||| || |||||| ||||||||||  ||||||||| ||||||||||||||||||||||    
T  35872187 atggttcaagtaaaaaataataatttatttaatatggttcataatcttcacaaattcttttcccataacttataatatattaaaa 35872103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 52351778 - 52351654
Alignment:
Q  37 gtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgat 134  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |    
T  52351778 gtaaagtttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggt 52351679  T
Q  135 tcaagtaaaaaattaaaatttattt 159  Q
    ||||||||||||| | |||||||||    
T  52351678 tcaagtaaaaaataataatttattt 52351654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 52351462 - 52351401
Alignment:
Q  153 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 212  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  52351462 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 52351401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 37 - 212
Target Start/End: Original strand, 37300164 - 37300342
Alignment:
Q  37 gtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgat 134  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||| |||||||||||||||||||||| |||||||| |    
T  37300164 gtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttatattgta-ttcaaatggt 37300262  T
Q  135 tcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataacttataatatattaaaa 212  Q
    ||||||||||||| | ||||||||| || || ||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  37300263 tcaagtaaaaaataataatttatttaatatgattcctaatcttcacatattcttttcccataacttataatatattaaaa 37300342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 36993171 - 36993043
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaa 130  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||||||||| |||||||||||||    
T  36993171 ataggtaaagtttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaa 36993072  T
Q  131 tgattcaagtaaaaaattaaaatttattt 159  Q
    || |||||||||||||| | |||||||||    
T  36993071 tggttcaagtaaaaaataataatttattt 36993043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 36992790 - 36992729
Alignment:
Q  153 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 212  Q
    ||||||| || ||||| ||||||||||||  |||||||| ||||||||||||||||||||||    
T  36992790 tttatttaatatggtttctaatcttcacacattcttttcccataacttataatatattaaaa 36992729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 33 - 212
Target Start/End: Original strand, 47232030 - 47232214
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttt-ttcttgatttatattgtatttcaaa 130  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||| ||||||||||| |||||||||||||    
T  47232030 ataggtaaagtatcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaa 47232129  T
Q  131 tgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataa-cttataatatattaaaa 212  Q
    || |||||||||||||| | ||||||||| || || ||||||||||||||  ||||||||| |||||  ||||||||||||||||    
T  47232130 tggttcaagtaaaaaataataatttatttaatatgattcctaatcttcacatattcttttcccataattttataatatattaaaa 47232214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 5766507 - 5766635
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaa 130  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||||||||| |||||||||||||    
T  5766507 ataggtaaagtttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaa 5766606  T
Q  131 tgattcaagtaaaaaattaaaatttattt 159  Q
    || |||||||||||||| | |||||||||    
T  5766607 tggttcaagtaaaaaataataatttattt 5766635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 5433236 - 5433047
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataat----tttttcttgatttatattgtatttc 127  Q
    ||||||||||||||| |||||||||||||  |||| |||||| |||||||||||| |||| || || ||||    |||||||||||||| ||||||||||    
T  5433236 ataggtaaagtttcaaagtgtttaatttaaatttagcaattatattggagaaaaatatgacaacttttaattttgtttttcttgatttacattgtatttc 5433137  T
Q  128 aaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat-tcttttctcataacttataatatattaaaacagaac 218  Q
    |||||  ||||||||||||  |  ||||||||||||||||||||||||||||||| | ||| | |||||| |||||||||||||||||||||    
T  5433136 aaatggctcaagtaaaaaa--atcatttatttcatgtggttcctaatcttcacatgtttttccccataacctataatatattaaaacagaac 5433047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 25417665 - 25417789
Alignment:
Q  37 gtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgat 134  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |    
T  25417665 gtaaagtttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggt 25417764  T
Q  135 tcaagtaaaaaattaaaatttattt 159  Q
    ||||||||||||| | |||||||||    
T  25417765 tcaagtaaaaaataataatttattt 25417789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 39065252 - 39065380
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaa 130  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||| || |||||| |||||||||||||||||||||||||||||    
T  39065252 ataggtaaagtttcatattgtttaatttaagtttaacaattagattgaagaaaaatatgacaacttataatttttttcttgatttatattgtatttcaaa 39065351  T
Q  131 tgattcaagtaaaaaattaaaatttattt 159  Q
     | |||||||||||||| | |||||||||    
T  39065352 cggttcaagtaaaaaataataatttattt 39065380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 5766893 - 5766954
Alignment:
Q  153 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 212  Q
    ||||||| || ||||| ||||||||||||  |||||||| ||||||||||||||||||||||    
T  5766893 tttatttaatatggtttctaatcttcacacattcttttcccataacttataatatattaaaa 5766954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 25417981 - 25418042
Alignment:
Q  153 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 212  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  25417981 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 25418042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 39065510 - 39065571
Alignment:
Q  153 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 212  Q
    ||||||| || |||||| |||||||||||  |||||||| ||||||||||||||||||||||    
T  39065510 tttatttaatatggttcttaatcttcacacattcttttcccataacttataatatattaaaa 39065571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 33 - 212
Target Start/End: Original strand, 22910886 - 22911071
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa--ttttttcttgatttatattgtatttcaa 129  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||||||||||||| |||| || ||||||  ||||||||| ||||| ||||||||| ||    
T  22910886 ataggtaaaatttcatagtgtttaattttagtttaacaattagattggagaaaaatatgacaacttataattttttttcttaatttacattgtattttaa 22910985  T
Q  130 atgattcaagtaaaa-aattaaaatttatttcatgtggttcctaatcttc--acattcttttctcataacttataatatattaaaa 212  Q
    ||| ||||||||||| ||| | ||||||||| || |||||||||||||||  | ||||||||| ||||||||||||||||||||||    
T  22910986 atggttcaagtaaaataataataatttatttaatatggttcctaatcttcatatattcttttcccataacttataatatattaaaa 22911071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 13788281 - 13788157
Alignment:
Q  37 gtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgat 134  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |    
T  13788281 gtaaagtttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggt 13788182  T
Q  135 tcaagtaaaaaattaaaatttattt 159  Q
    ||||||||||||| | |||||||||    
T  13788181 tcaagtaaaaaataataatttattt 13788157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 25805861 - 25805985
Alignment:
Q  37 gtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgat 134  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |    
T  25805861 gtaaagtttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggt 25805960  T
Q  135 tcaagtaaaaaattaaaatttattt 159  Q
    ||||||||||||| | |||||||||    
T  25805961 tcaagtaaaaaataataatttattt 25805985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 39625379 - 39625267
Alignment:
Q  36 ggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa--ttttttcttgatttatattgtatttcaaatg 132  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| || ||||||  ||||||||||||||| ||||||||||||||     
T  39625379 ggtaaagtttcatagtgtataatttaagtttaacaattagattggagaaaaatatgacaacttataattttttttcttgatttacattgtatttcaaata 39625280  T
Q  133 attcaagtaaaaa 145  Q
    |||||||||||||    
T  39625279 attcaagtaaaaa 39625267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 13787965 - 13787904
Alignment:
Q  153 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 212  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  13787965 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 13787904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 25806177 - 25806238
Alignment:
Q  153 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 212  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  25806177 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 25806238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 29457258 - 29457077
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaa 130  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||  || |||||| ||||||||||||||| |||||||||||||    
T  29457258 ataggtaaaatttcatagtgtttaatttaaatttaacaattagattggagaaaaatatgtcaacttataatttttttcttgatttacattgtatttcaaa 29457159  T
Q  131 tgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataacttataatatattaaaa 212  Q
    || || |||||||||| ||| |||| ||| || ||||||||||| |||||  ||||||||| |||||| |||||||||||||||    
T  29457158 tggttgaagtaaaaaa-taatattt-tttaatatggttcctaattttcacatattcttttcccataacctataatatattaaaa 29457077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 7572181 - 7572305
Alignment:
Q  37 gtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgat 134  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |    
T  7572181 gtaaagtttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggt 7572280  T
Q  135 tcaagtaaaaaattaaaatttattt 159  Q
    ||||||||||||| | |||||||||    
T  7572281 tcaagtaaaaaataataatttattt 7572305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 16666776 - 16666900
Alignment:
Q  37 gtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgat 134  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |    
T  16666776 gtaaagtttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggt 16666875  T
Q  135 tcaagtaaaaaattaaaatttattt 159  Q
    ||||||||||||| | |||||||||    
T  16666876 tcaagtaaaaaataataatttattt 16666900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 43566053 - 43565868
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttt-----ttcttgatttatattgtattt 126  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||  || ||||||||||     ||||||||||| |||||||||    
T  43566053 ataggtaaaatttcataatgtttaatttaagtttaacaattagattggagaaaaatatgtcaacttataattttttttcttcttgatttacattgtattt 43565954  T
Q  127 caaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataacttataatatattaaaa 212  Q
    |||||| || |||||||||| ||| |||| ||| || ||||||||||| |||||  ||||||||| |||||| |||||||||||||||    
T  43565953 caaatggttgaagtaaaaaa-taatattt-tttaatatggttcctaattttcacatattcttttcccataacctataatatattaaaa 43565868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 7572497 - 7572558
Alignment:
Q  153 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 212  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  7572497 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 7572558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 16667092 - 16667153
Alignment:
Q  153 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 212  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  16667092 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 16667153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 13431543 - 13431667
Alignment:
Q  37 gtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgat 134  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |    
T  13431543 gtaaagtttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggt 13431642  T
Q  135 tcaagtaaaaaattaaaatttattt 159  Q
    ||||||||||||| | |||||||||    
T  13431643 tcaagtaaaaaataataatttattt 13431667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 18884494 - 18884319
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttt-----ttcttgatttatattgtattt 126  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||     ||||||||||| |||||||||    
T  18884494 ataggtaaagtttcatagtgtataatttaagtttaacaattagattggagaaaaatatgataacttataattttttttcttcttgatttacattgtattt 18884395  T
Q  127 caaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttc--acattcttttctcataacttat 200  Q
    ||||| ||||||||||||||  | | ||||||| || | |||| ||||||||  | ||||||||| || |||||||    
T  18884394 caaataattcaagtaaaaaacaatagtttatttaatatagttcataatcttcgtatattcttttcccacaacttat 18884319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 13431859 - 13431920
Alignment:
Q  153 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 212  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  13431859 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 13431920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 4270 - 4195
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaa-aaaatgataatttataatttttt 107  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| || ||||||||||||    
T  4270 ataggtaaagtttcaaagtgtttaatttaagtttaacaattagattggagaaaaaaatgacaacttataatttttt 4195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 13502 - 13427
Alignment:
Q  33 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttttt 107  Q
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T  13502 ataggtaaagtttcaaagtgtttaatttaagtttaacaattagattgaagaaaaatatgacaacttataatttttt 13427  T

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