View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21367_low_12 (Length: 334)
Name: NF21367_low_12
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21367_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 101 - 320
Target Start/End: Complemental strand, 26744871 - 26744652
Alignment:
| Q |
101 |
ggaagcaaagtggtacttatagttgtcacccaaagacaaagtttttaaatgggtttcattcaccacatttccaaaaatcaattttcttgctattgccgaa |
200 |
Q |
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| T |
26744871 |
ggaagcaaagtggtacttatagttgtcacccaaagacaaagtttttaaatgggtttcattcaccacatttccaaaaatcaattttcttgctattgccgaa |
26744772 |
T |
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| Q |
201 |
aaacaatattcatttttcccacgagaacattgtcaaggatgatagcttggtttgttcacaaaatgcaccaaaacaactagtaagattatatctcaaaggc |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26744771 |
aaacaatattgatttttcccacgagaacattgtcaaggatgatagcttggtttgttcacaaaatgcaccaaaacaactagtaagattatatgtcaaaggc |
26744672 |
T |
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| Q |
301 |
aaagacaatggatcagtgaa |
320 |
Q |
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||||||||| |||||||||| |
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| T |
26744671 |
aaagacaatcgatcagtgaa |
26744652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 26744895 - 26745000
Alignment:
| Q |
1 |
cactcacacagtcgcatgcacaaatgcttacattgtttataggtataatttgcgtaagtaccataatcatatccataaaatttgacatggggtaagtgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26744895 |
cactcacacagtcgcatgcacaaatgcttacattgtttataggtataatttgcgtaagtaccataatcatatccataaaatttgacatggggtaagtgtt |
26744994 |
T |
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| Q |
101 |
ggaagc |
106 |
Q |
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|||||| |
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| T |
26744995 |
ggaagc |
26745000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 26699484 - 26699536
Alignment:
| Q |
4 |
tcacacagtcgcatgcacaaatgcttacattgtttataggtataatttgcgta |
56 |
Q |
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||||||| ||||| |||||||||||||||||||||||||| |||||| |||| |
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| T |
26699484 |
tcacacaatcgcaaacacaaatgcttacattgtttataggtgtaattttcgta |
26699536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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