View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21367_low_13 (Length: 315)
Name: NF21367_low_13
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21367_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 45103829 - 45103536
Alignment:
| Q |
16 |
tcttcttcatcatcagtacttgtttgatgacaatattgcccttgcatattctctacatcaaccatttcctattgtaataatgacagttagttaaaaagtt |
115 |
Q |
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| T |
45103829 |
tcttcttcatcatcagtacttgtttgatgacaatattgcccttgcatattctctacatcaaccatttcctattgtaataatgacagttagttaaaaagtt |
45103730 |
T |
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| Q |
116 |
aaaacaaggtttatgagaaaatataaatgatacataaca--nnnnnnnngttgatcataatgatttacgatttatnnnnnnncataaagtataacttatg |
213 |
Q |
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| T |
45103729 |
aaaacaaggtttatgagaaaatataaatgatacataacattttttttttgttgatcataatgatttaggatttataaaaaaacataaagtataacttatg |
45103630 |
T |
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| Q |
214 |
agaaataattatatgtgtagctagtgttattaccgaatgaagaggccaattttcccatgtttgctccatcagaagaaaatgtgttctgttctgt |
307 |
Q |
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| T |
45103629 |
agaaataattatatgtgtagctagtgttattaccgaatgaagaggccaattttcccatgtttgctccatcagaagaaaatgtgttctgttctgt |
45103536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 45130458 - 45130384
Alignment:
| Q |
16 |
tcttcttcatcatcagtacttgtttgatgacaatattgcccttgcatattctctacatcaaccatttcctattgt |
90 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||| ||| | |||||||||| ||| |||||||||| |
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| T |
45130458 |
tcttcttcatcatcagcactagtttgatgacaatattgccctagcaaaacctctacatcacccaattcctattgt |
45130384 |
T |
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