View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21367_low_17 (Length: 254)
Name: NF21367_low_17
Description: NF21367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21367_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 28670551 - 28670316
Alignment:
| Q |
1 |
tggcacttggatcttctttgtatgagttattgtcagaggctctcggccttaaccgttctcaccttaaagaaatgggtgctgctgaaagttttgtacatct |
100 |
Q |
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| T |
28670551 |
tggcacttggatcttctttgtacgagttattgtcagaggctctcggtcttaaccgctctcaccttaaagaaatgggcgctgctgaaagttttgtacatct |
28670452 |
T |
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| Q |
101 |
atgtcattattatccggtatgccctgagccggagttaactattggcactaccaagcactcagatgctagctttattacagtacttttacaagatcatatt |
200 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28670451 |
atgtcattattatccagcatgccctgagccggagttaactattggcactaccaagcactcagatgctagctttattacagtacttttgcaagatcatatt |
28670352 |
T |
|
| Q |
201 |
ggtggcctacaaattcttcatgacaatcagtggatt |
236 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
28670351 |
ggtggcttacaaattcttcatgacaatcagtggatt |
28670316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 28639684 - 28639450
Alignment:
| Q |
2 |
ggcacttggatcttctttgtatgagttattgtcagaggctctcggccttaaccgttctcaccttaaagaaatgggtgctgctgaaagttttgtacatcta |
101 |
Q |
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||||||||||||||||||||||||||||||||||||| | || |||||||| || | |||||||||||||||||||||||||||||||||| | |||||| |
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| T |
28639684 |
ggcacttggatcttctttgtatgagttattgtcagagtcacttggccttaatcgctttcaccttaaagaaatgggtgctgctgaaagttttttccatcta |
28639585 |
T |
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| Q |
102 |
tgtcattattatccggtatgccctgagccggagttaactattggcactaccaagcactcagatgctagctttattacagtacttttacaagatcatattg |
201 |
Q |
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| T |
28639584 |
tgtcattattatccaccatgccctgagccagagttaaccattggcactgtcaagcactcagatgctagctttattacaatagttttgcaagatcatattg |
28639485 |
T |
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| Q |
202 |
gtggcctacaaattcttcatgacaatcagtggatt |
236 |
Q |
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||||| || || |||||||||||||||| |||||| |
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| T |
28639484 |
gtggcttagaagttcttcatgacaatcaatggatt |
28639450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 28648991 - 28648757
Alignment:
| Q |
2 |
ggcacttggatcttctttgtatgagttattgtcagaggctctcggccttaaccgttctcaccttaaagaaatgggtgctgctgaaagttttgtacatcta |
101 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||||| || | |||||||||||||||||||||||||||||||||| | |||||| |
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| T |
28648991 |
ggcacttggatcttctttgtatgagttattgtcagagtctcttggccttaatcgctttcaccttaaagaaatgggtgctgctgaaagttttttccatcta |
28648892 |
T |
|
| Q |
102 |
tgtcattattatccggtatgccctgagccggagttaactattggcactaccaagcactcagatgctagctttattacagtacttttacaagatcatattg |
201 |
Q |
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|||||||||| ||| |||||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||| |
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| T |
28648891 |
tgtcattattgtccaccatgccctgagccagagttaaccattggcactgtcaagcactcagatggtagctttattacaatacttttgcaagatcatattg |
28648792 |
T |
|
| Q |
202 |
gtggcctacaaattcttcatgacaatcagtggatt |
236 |
Q |
| |
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||||| || || |||||||| ||||||| |||||| |
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| T |
28648791 |
gtggcttagaagttcttcataacaatcaatggatt |
28648757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 28674442 - 28674227
Alignment:
| Q |
14 |
ttctttgtatgagttattgtcagaggctctcggccttaaccgttctcaccttaaagaaatgggtgctgctgaaagttttgtacatctatgtcattattat |
113 |
Q |
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|||||||| ||||||||| ||||| ||||| || ||||| || | |||||||||||||||||||| |||||||| ||| | | | ||||| ||||| |
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| T |
28674442 |
ttctttgtttgagttattatcagaagctctaggtcttaatcgctttcaccttaaagaaatgggtggtgctgaaaagttttttctcttgtgtcactattac |
28674343 |
T |
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| Q |
114 |
ccggtatgccctgagccggagttaactattggcactaccaagcactcagatgctagctttattacagtacttttacaagatcatattggtggcctacaaa |
213 |
Q |
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|| |||||||||||| |||||||| || |||||||| |||||| | || | ||||||||| ||| ||||| | || |||||| |||||||| ||||| |
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| T |
28674342 |
ccaccatgccctgagccagagttaaccataggcactacaaagcacacggacggtagctttatgacaatacttctgcaggatcatgttggtggcttacaag |
28674243 |
T |
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| Q |
214 |
ttcttcatgacaatca |
229 |
Q |
| |
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|||||||||||||||| |
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| T |
28674242 |
ttcttcatgacaatca |
28674227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 28690629 - 28690574
Alignment:
| Q |
181 |
tacttttacaagatcatattggtggcctacaaattcttcatgacaatcagtggatt |
236 |
Q |
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||||||| |||||||||||||| ||| ||||| ||||||||||| |||| |||||| |
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| T |
28690629 |
tacttttgcaagatcatattggcggcttacaagttcttcatgacgatcaatggatt |
28690574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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